LOCUS BC090932 4232 bp mRNA linear HUM 17-MAY-2005
DEFINITION Homo sapiens ninein (GSK3B interacting protein), mRNA (cDNA clone
MGC:104964 IMAGE:3090109), complete cds.
ACCESSION BC090932
VERSION BC090932.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4232)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4232)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 199 Row: d Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33946320.
FEATURES Location/Qualifiers
source 1..4232
/db_xref="H-InvDB:HIT000334294"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104964 IMAGE:3090109"
/tissue_type="Lymph, normal germinal center B cells"
/clone_lib="NIH_MGC_50"
/lab_host="DH10B"
/note="Vector: pT7T3-Pac"
gene 1..4232
/gene="NIN"
/gene_synonym="KIAA1565"
/db_xref="GeneID:51199"
/db_xref="MIM:608684"
CDS 36..4169
/gene="NIN"
/gene_synonym="KIAA1565"
/codon_start=1
/product="NIN protein"
/protein_id="AAH90932.1"
/db_xref="GeneID:51199"
/db_xref="MIM:608684"
/translation="MDEVEQDQHEARLKELFDSFDTTGTGSLGQEELTDLCHMLSLEE
VAPVLQQTLLQDNLLGRVHFDQFKEALILILSRTLSNEEHFQEPDCSLEAQPKYVRGG
KRYGRRSLPEFQESVEEFPEVTVIEPLDEEARPSHIPAGDCSEHWKTQRSEEYEAEGQ
LRFWNPDDLNASQSGSSPPQDWIEEKLQEVCEDLGITRDGHLNRKKLVSICEQYGLQN
VDGEMLEEVFHNLDPDGTMSVEDFFYGLFKNGKSLTPSASTPYRQLKRHLSMQSFDES
GRRTTTSSAMTSTIGFRVFSCLDDGMGHASVERILDTWQEEGIENSQEILKALDFSLD
GNINLTELTLALENELLVTKNSIHQAALASFKAEIRHLLERVDQVVREKEKLRSDLDK
AEKLKSLMASEVDDHHAAIERRNEYNLRKLDEEYKERIAALKNELRKEREQILQQAGK
QRLELEQEIEKAKTEENYIRDRLALSLKENSRLENELLENAEKLAEYENLTNKLQRNL
ENVLAEKFGDLDPSSAEFFLQEERLTQMRNEYERQCRVLQDQVDELQSELEEYRAQGR
VLRLPLKNSPSEEVEANSGGIEPEHGLGSEECNPLNMSIEAELVIEQMKEQHHRDICC
LRLELEDKVRHYEKQLDETVVSCKKAQENMKQRHENETHTLEKQISDLKNEIAELQGQ
AAVLKEAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLRLQHEMELKARLTQAQASFER
EREGLQSSAWTEEKVRGLTQELEQFHQEQLTSLVEKHTLEKEELRKELLEKHQRELQE
GRYESEKLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQ
KMVENLKKQISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQKEKEPGN
SALEEREQEKFNLKEELERCKVQSSTLVSSLEAELSEVKIQTHIVQQENHLLKDELEK
MKQLHRCPDLSDFQQKISSVLSYNEKLLKEKEALSEELNSCVDKLAKSSLLEHRIATM
KQEQKSWEHQSASLKSQLVASQEKVQNLEDTVQNVNLQMSRMKSDLRVTQQEKEALKQ
EVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQENERL
QTMVQNTKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQFQK
EQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQHLRSTATPSPSPHA
WDLQLLQQQACPMVPREQFLQLQRQLLQAERINQHLQEELENRTSETNTPQGNQEQLV
TVMEERMIEVEQKLKLVKRLLQEKVNQLKEQVSLPGHLCSPTSHSSFNSSFTSLYCH"
BASE COUNT 1441 a 862 c 1077 g 852 t
ORIGIN
1 gagaccgaca gaaggtgagc actgtgggct atgggatgga tgaggtggag caggaccagc
61 atgaggcccg actcaaggag ctgtttgaca gttttgacac gacgggcaca gggtccctgg
121 ggcaggagga actcaccgac ctttgccaca tgttgagctt ggaggaggtg gccccagtgc
181 tgcagcagac attacttcag gacaacctct tgggcagggt acattttgac caatttaaag
241 aagcattaat actcatcttg tccagaactc tgtcaaatga agaacacttt caagaaccag
301 actgctcact agaagctcag cccaaatatg ttagaggtgg gaagcgttac ggacgaaggt
361 ccttgcccga gttccaagag tccgtggagg agtttcctga agtgacggtg attgagccac
421 tggatgaaga agcgcggcct tcacacatcc cagccggtga ctgcagtgag cactggaaga
481 cgcaacgcag tgaggagtat gaagcggaag gccagttaag gttttggaac ccagatgact
541 tgaatgcttc acagagtgga tcttcccctc cccaagactg gatagaagag aaactgcaag
601 aagtttgtga agatttgggg atcacccgtg atggtcacct gaaccggaag aagctggtct
661 ccatctgtga gcagtatggt ttacagaatg tggatggaga gatgctcgag gaagtattcc
721 ataatcttga tcctgacggt acaatgagtg tagaagattt tttctatggt ttgtttaaaa
781 atggaaaatc tcttacacca tcagcatcta ctccatatag acaactaaaa aggcaccttt
841 ccatgcagtc tttcgatgag agtggacgac gtaccacaac ctcatcagca atgacaagta
901 ccattggctt tcgggtcttc tcctgcctgg atgatgggat gggccatgca tctgtggaga
961 gaatactgga cacctggcag gaagagggca ttgagaacag ccaggagatc ctgaaggcct
1021 tggatttcag cctcgatgga aacatcaatt tgacagaatt aacactggcc cttgaaaatg
1081 aacttttggt taccaagaac agcattcacc aggcggctct ggccagcttt aaggctgaaa
1141 tccggcattt gttggaacga gttgatcagg tggtcagaga aaaagagaag ctacggtcag
1201 atctggacaa ggccgagaag ctcaagtctt taatggcctc ggaggtggat gatcaccatg
1261 cggccataga gcggcggaat gagtacaacc tcaggaaact ggatgaagag tacaaggagc
1321 gaatagcagc cttaaaaaat gaactccgaa aagagagaga gcagatcctg cagcaggcag
1381 gcaagcagcg tttagaactt gaacaggaaa ttgaaaaggc aaaaacagaa gagaactata
1441 tccgggaccg ccttgccctc tctttaaagg aaaacagtcg tctggaaaat gagcttctag
1501 aaaatgcaga gaagttggca gaatatgaga atctgacaaa caaacttcag agaaatttgg
1561 aaaatgtgtt agcagaaaag tttggtgacc tcgatcctag cagtgctgag ttcttcctgc
1621 aagaagagag actgacacag atgagaaatg aatatgagcg gcagtgcagg gtactacaag
1681 accaagtaga tgaactccag tctgagctgg aagaatatcg tgcacaaggc agagtgctca
1741 ggcttccgtt gaagaactca ccgtcagaag aagttgaggc taacagcggt ggcattgagc
1801 ccgaacacgg gctcggttct gaagaatgca atccattgaa tatgagcatt gaggcagagc
1861 tggtcattga acagatgaaa gaacaacatc acagggacat atgttgcctc agactggagc
1921 tcgaagataa agtgcgccat tatgaaaagc agctggacga aaccgtggtc agctgcaaga
1981 aggcacagga gaacatgaag caaaggcatg agaacgaaac gcacacctta gaaaaacaaa
2041 taagtgacct taaaaatgaa attgctgaac ttcaggggca agcagcagtg ctcaaggagg
2101 cacatcatga ggccacttgc aggcatgagg aggagaaaaa acaactgcaa gtgaagcttg
2161 aggaggaaaa gactcacctg caggagaagc tgaggctgca acatgagatg gagctcaagg
2221 ctagactgac acaggctcaa gcaagctttg agcgggagag ggaaggcctt cagagtagcg
2281 cctggacaga agagaaggtg agaggcttga ctcaggaact agagcagttt caccaggagc
2341 agctgacaag cctggtggag aaacacactc ttgagaaaga ggagttaaga aaagagctct
2401 tggaaaagca ccaaagggag cttcaggagg gaagatatga atctgaaaag cttcaacagg
2461 aaaattctat tttgagaaat gaaattacta ctttaaatga agaagatagc atttctaacc
2521 tgaaattagg gacattaaat ggatctcagg aagaaatgtg gcaaaaaacg gaaactgtaa
2581 aacaagaaaa tgctgcagtt cagaagatgg ttgaaaattt aaagaaacag atttcagaat
2641 taaaaatcaa aaaccaacaa ttggatttgg aaaatacaga acttagccaa aagaactctc
2701 aaaaccagga aaaactgcaa gaacttaatc aacgtctaac agaaatgcta tgccagaagg
2761 aaaaagagcc aggaaacagt gcattggagg aacgggaaca agagaagttt aatctgaaag
2821 aagaactgga acgttgtaaa gtgcagtcct ccactttagt gtcttctctc gaggcggagc
2881 tctctgaagt taaaatacag acccatattg tgcaacagga aaaccacctt ctcaaagatg
2941 aactggagaa aatgaaacag ctgcacagat gtcccgatct ctctgacttc cagcaaaaaa
3001 tctctagtgt tctaagctac aacgaaaaac tgctgaaaga aaaggaagct ctgagtgagg
3061 aattaaatag ctgtgtcgat aagttggcaa aatcaagtct tttagagcat agaattgcga
3121 cgatgaagca ggaacagaaa tcctgggaac atcagagtgc gagcttaaag tcacagctgg
3181 tggcttctca ggaaaaggtt cagaatttag aagacaccgt gcagaatgta aacctgcaaa
3241 tgtcccggat gaaatctgac ctacgagtga ctcagcagga aaaggaggct ttaaaacaag
3301 aagtgatgtc tttacataag caacttcaga atgctggtgg caagagctgg gccccagaga
3361 tagctactca tccatcaggg ctccataacc agcagaaaag gctgtcctgg gacaagttgg
3421 atcatctgat gaatgaggaa cagcagctgc tttggcaaga gaatgagagg ctccagacca
3481 tggtacagaa caccaaagcc gaactcacgc actcccggga gaaggtccgt caattggaat
3541 ccaatcttct tcccaagcac caaaaacatc taaacccatc aggtaccatg aatcccacag
3601 agcaagaaaa attgagctta aagagagagt gtgatcagtt tcagaaagaa caatctcctg
3661 ctaacaggaa ggtcagtcag atgaattccc ttgaacaaga attagaaaca attcatttgg
3721 aaaatgaagg cctgaaaaag aaacaagtaa aactggatga gcagctcatg gagatgcagc
3781 acctgaggtc cactgcgacg cctagcccgt cccctcatgc ttgggatttg cagctgctcc
3841 agcagcaagc ctgtccgatg gtgcccaggg agcagtttct gcagcttcaa cgccagctgc
3901 tgcaggcaga aaggataaac cagcacctgc aggaggaact tgaaaacagg acctccgaaa
3961 ccaacacacc acagggaaac caggaacaac tggtaactgt catggaggaa cgaatgatag
4021 aagttgaaca gaaactgaaa ctagtgaaaa ggcttcttca agagaaagtg aatcagctca
4081 aagaacaagt gagcctaccc ggtcatctct gttcacccac ctcacattcc agctttaact
4141 ccagttttac atccctttat tgccattaac tcgttaactt atgttgtcta ataaaggcaa
4201 attctattat aaaaaaaaaa aaaaaaaaaa aa
//