LOCUS BC090919 400 bp mRNA linear HUM 18-AUG-2006 DEFINITION Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast), mRNA (cDNA clone IMAGE:30371337), partial cds. ACCESSION BC090919 VERSION BC090919.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 400) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 400) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Michael Brownstein and Dr. Miklos Palkovits cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 68 Row: b Column: 9 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18375674. FEATURES Location/Qualifiers source 1..400 /db_xref="H-InvDB:HIT000334281" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:30371337" /tissue_type="Skin and meninges pool- skin, dura matter, pia matter, choroid plexus." /clone_lib="NIH_MGC_186" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..>400 /gene="UPF2" /gene_synonym="DKFZP434D222" /gene_synonym="HUPF2" /gene_synonym="KIAA1408" /gene_synonym="RENT2" /db_xref="GeneID:26019" /db_xref="HGNC:HGNC:17854" /db_xref="MIM:605529" CDS 74..>400 /gene="UPF2" /gene_synonym="DKFZP434D222" /gene_synonym="HUPF2" /gene_synonym="KIAA1408" /gene_synonym="RENT2" /codon_start=1 /product="UPF2 protein" /protein_id="AAH90919.1" /db_xref="GeneID:26019" /db_xref="HGNC:HGNC:17854" /db_xref="MIM:605529" /translation="MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLT AKKEVSKAPEDKKKRLEDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEKKK KKKKKKK" BASE COUNT 192 a 59 c 109 g 40 t ORIGIN 1 gagcgctgga gttggtgctg ggaaacccgg ggctaatgtt gacaacaggc tcgagattgt 61 cctgggtcac ataatgccag ctgagcgtaa aaagccagca agtatggaag aaaaagactc 121 tttaccaaac aacaaggaaa aagactgcag tgaaaggcgg acagtgagca gcaaggagag 181 gccaaaagac gatatcaagc tcactgccaa gaaggaggtc agcaaggccc ctgaagacaa 241 gaagaagaga ctggaagatg ataagagaaa aaaggaagac aaggaacgca agaaaaaaga 301 cgaagaaaag gtgaaggcag aggaagaatc aaagaaaaaa gaagaggaag aaaaaaagaa 361 acatcaagag aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa //