LOCUS BC090907 1110 bp mRNA linear VRT 15-JUL-2006 DEFINITION Danio rerio zgc:103638, mRNA (cDNA clone MGC:103638 IMAGE:7255405), complete cds. ACCESSION BC090907 VERSION BC090907.1 KEYWORDS MGC. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1110) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1110) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: William S. Talbot, Stanford University cDNA Library Preparation: Dr. Sumio Sugano cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 192 Row: l Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 60552544. FEATURES Location/Qualifiers source 1..1110 /organism="Danio rerio" /mol_type="mRNA" /db_xref="taxon:7955" /clone="MGC:103638 IMAGE:7255405" /tissue_type="Larvae, whole, 5 day old, mixed wild type, 650 pooled" /clone_lib="NIH_ZGC_19" /lab_host="DH10B" /note="Vector: pME18S-FL3" gene 1..1110 /gene="zgc:103638" /db_xref="GeneID:541394" /db_xref="ZFIN:ZDB-GENE-050320-93" CDS 169..516 /gene="zgc:103638" /codon_start=1 /product="zgc:103638" /protein_id="AAH90907.1" /db_xref="GeneID:541394" /db_xref="ZFIN:ZDB-GENE-050320-93" /translation="MVYDDANKKWVPAGGSTGFSRVHIYHHTGNNAFRVVGRKIQDHQ VVINCAIPKGLKYNQATQTFHQWRDARQVYGLNFGSKEDASVFASAMMHALEVLNSQD AGEKALFTAGCEV" BASE COUNT 311 a 233 c 277 g 289 t ORIGIN 1 atagacccgt ctggcggctg acagcttcca ggacacctcg ggctctgagg aatctggaca 61 ctttggagaa gaacaggagt agacaggctc cttgcgggtg gaggtttgga acacgcagca 121 atgacacgtg atgttgagca gagtatctgt caggcgaggg ccgctgtcat ggtttatgat 181 gacgccaata agaagtgggt tccggctggt ggatccacag gctttagcag agtccacatc 241 tatcaccaca ctggcaacaa cgccttccga gtagtgggcc gtaaaattca ggaccaccag 301 gtggtaataa actgtgccat tcccaagggg ctgaaataca accaggccac gcaaaccttt 361 caccagtggc gagatgcacg gcaggtgtac ggccttaact ttggcagcaa agaggatgcc 421 agtgtatttg ccagtgccat gatgcatgcc ctagaggtgc tgaactctca ggatgcaggt 481 gagaaagccc ttttcactgc agggtgcgaa gtttaactac atgtgaattg tgtgagctcg 541 gctgtgtatt atgatgctgt aatgctgcat ttatagtgac acttgaagaa tcatgtcata 601 tatctctatg catagatagt tggacggacg gacggacgga cggactgaca gacagacaga 661 tagataaaaa aaaaaaatgc tgaattaaca atgtaacaat gctgtttact gtgaaattca 721 catttgaatc tcaggctctc agagagaagc tgtggggaac atagagaaat gtctgctcag 781 ctcctgttgc ctcagggaga gcatctttaa tgaagacgat tcgccttttg ggattttcat 841 ctctccctct tctcatctgc cttccagctg atccctcttg cctccatatt cctccatatt 901 ccttattcat acactttctc tccgaataga tgctaggtat gcatttacag tagctgtact 961 tcgtcctggt gttgaggata acatataatt ataattgaaa gtagttcaaa gagattatga 1021 cttttgctgc tggtgataat aaatctgaga gaaaggttta tgttgggagt gagaatctca 1081 tcgcgttcat gcgaaaaaaa aaaaaaaaaa //