LOCUS BC090883 2133 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splicing factor 3b, subunit 4, 49kDa, mRNA (cDNA clone
MGC:102968 IMAGE:30386953), complete cds.
ACCESSION BC090883
VERSION BC090883.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2133)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2133)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 196 Row: g Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23111059.
FEATURES Location/Qualifiers
source 1..2133
/db_xref="H-InvDB:HIT000334267"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:102968 IMAGE:30386953"
/tissue_type="Testis"
/clone_lib="NIH_MGC_180"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..2133
/gene="SF3B4"
/gene_synonym="MGC10828"
/gene_synonym="SAP49"
/gene_synonym="SF3b49"
/db_xref="GeneID:10262"
/db_xref="HGNC:HGNC:10771"
/db_xref="MIM:605593"
CDS 614..1888
/gene="SF3B4"
/gene_synonym="MGC10828"
/gene_synonym="SAP49"
/gene_synonym="SF3b49"
/codon_start=1
/product="splicing factor 3b, subunit 4, 49kDa"
/protein_id="AAH90883.1"
/db_xref="GeneID:10262"
/db_xref="HGNC:HGNC:10771"
/db_xref="MIM:605593"
/translation="MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHM
PKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANI
FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE
AMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPPP
SAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPP
SAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPP
PRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTGPPRPP
PYGYQRGPLPPPRPTPRPPVPPRGPLRGPLPQ"
BASE COUNT 483 a 660 c 505 g 485 t
ORIGIN
1 gtttgaataa aggattctcc taggtaggaa agtggtgggt aaaaggggtg tatgacccaa
61 gagaggaagg catccaccat attattgcta aggaaatagg ggaactgggt ttggtgaggc
121 tctgcaaaat tcaagtgcaa tttggggaaa gggttctctt gtgtgtgtct cccatttaga
181 ggcagatggg gccagagtgt tctagagatc cagactctag agctccgatc ccatccaccc
241 ctcagctgtg gtcacacacc aacgcggagc agccctcacc ctccccatgc aattaggacg
301 agctttcgaa tttacacttt tgagagcagt gtgattcttt caagtctagc agtgcattaa
361 gagggcctga gcgtttccgt tccgccctcc tcgctaagac aactagcagc ggcacctcag
421 gacgcgagcc gaggactcta ccgcccgacc caggttaagt ttcggaggct cctaagatgg
481 ctgcagccgc ttccaggcac ctcctcttcc gcggccccgc ccaccgctac gtccgtcttc
541 gccccggaag tggaagtcgt gctgaggtca gaaggcggaa ccgctgctgg gagacggcgg
601 gatctctttc gccatggctg ccgggccgat ctccgagcgg aatcaggatg ccactgtgta
661 cgtggggggc ctggatgaga aggttagtga accgctgctg tgggaactgt ttctccaggc
721 tggaccagta gtcaacaccc acatgccaaa ggatagagtc actggccagc accaaggcta
781 tggctttgtg gaattcttga gtgaggaaga tgctgactat gccattaaga tcatgaacat
841 gatcaaactc tatgggaagc caatacgggt gaacaaagca tcagctcaca acaaaaacct
901 ggatgtaggg gccaacattt tcattgggaa cctggaccct gagattgatg agaagttgct
961 ttatgatact ttcagcgcct ttggggtcat cttacaaacc cccaaaatta tgcgggaccc
1021 tgacacaggc aactccaaag gttatgcctt tattaatttt gcttcatttg atgcttcgga
1081 tgcagcaatt gaagccatga atgggcagta cctctgtaac cgtcctatca ccgtatctta
1141 tgccttcaag aaggactcca agggtgagcg ccatggctca gcagccgaac gacttctggc
1201 agctcagaac ccgctctccc aggctgatcg ccctcatcag ctgtttgcag atgcacctcc
1261 tccaccctct gctcccaatc ctgtggtatc atcattgggg tctgggcttc ctccaccagg
1321 catgcctcct cctggctcct tcccaccccc agtgccacct cctggagccc tcccacctgg
1381 gataccccca gccatgcccc caccacctat gcctcctggg gctgcaggac atggcccccc
1441 atcggcagga accccagggg caggacatcc tggtcatgga cactcacatc ctcacccatt
1501 cccaccgggt gggatgcccc atccagggat gtctcagatg cagcttgcac accatggccc
1561 tcatggctta ggacatcccc acgctggacc cccaggctct gggggccagc caccgccccg
1621 accaccacct ggaatgcctc atcctggacc tcctccaatg ggcatgcccc cccgagggcc
1681 tccattcgga tctcccatgg gtcacccagg tcctatgcct ccgcatggta tgcgtggacc
1741 tcctccactg atgccccccc atggatacac tggccctcca cgacccccac cctatggcta
1801 ccagcggggg cctctccctc cacccagacc cactccccgg ccaccagttc cccctcgagg
1861 cccacttcga ggccctctcc ctcagtaaat tcacattttc cttcctcctg ttacattttc
1921 ccaatatctt ttctattcct tggaccaatc agagatgctg tagctccttg gggcaaaggt
1981 actaatccct ttcagcaccc ccactccatt ccccttttta atgtaacttt ttccacagga
2041 ggtatttctt ttttatgttg gtcctgagta ttttgcaaat gcacagagaa aataaaacta
2101 aactccttgt taaaaaaaaa aaaaaaaaaa aaa
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