LOCUS BC090042 1783 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens voltage-dependent anion channel 1, mRNA (cDNA clone
MGC:111064 IMAGE:30395350), complete cds.
ACCESSION BC090042
VERSION BC090042.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1783)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1783)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 196 Row: j Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4507878.
FEATURES Location/Qualifiers
source 1..1783
/db_xref="H-InvDB:HIT000266302"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:111064 IMAGE:30395350"
/tissue_type="White Matter pool- 5 brain tissues- femoral
artery, olfactory tract, optic tract, cerebellar white
matter, cerebral white matter."
/clone_lib="NIH_MGC_181"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1783
/gene="VDAC1"
/gene_synonym="PORIN"
/gene_synonym="PORIN-31-HL"
/db_xref="GeneID:7416"
/db_xref="HGNC:HGNC:12669"
/db_xref="MIM:604492"
CDS 56..907
/gene="VDAC1"
/gene_synonym="PORIN"
/gene_synonym="PORIN-31-HL"
/codon_start=1
/product="voltage-dependent anion channel 1"
/protein_id="AAH90042.1"
/db_xref="GeneID:7416"
/db_xref="HGNC:HGNC:12669"
/db_xref="MIM:604492"
/translation="MAVPPTYADLGKSARDVFTKGYGFGLIKLDLKTKSENGLEFTSS
GSANTETTKVTGSLETKYRWTEYGLTFTEKWNTDNTLGTEITVEDQLARGLKLTFDSS
FSPNTGKKNAKIKTGYKREHINLGCDMDFDIAGPSIRGALVLGYEGWLAGYQMNFETA
KSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETAVNLAWTAGNSNTR
FGIAAKYQIDPDACFSAKVNNSSLIGLGYTQTLKPGIKLTLSALLDGKNVNAGGHKLG
LGLEFQA"
BASE COUNT 509 a 378 c 404 g 492 t
ORIGIN
1 cgcagccccc gccgtagccg cctccgagcc cgccgccaca tcctctgagc agaagatggc
61 tgtgccaccc acgtatgccg atcttggcaa atctgccagg gatgtcttca ccaagggcta
121 tggatttggc ttaataaagc ttgatttgaa aacaaaatct gagaatggat tggaatttac
181 aagctcaggc tcagccaaca ctgagaccac caaagtgacg ggcagtctgg aaaccaagta
241 cagatggact gagtacggcc tgacgtttac agagaaatgg aataccgaca atacactagg
301 caccgagatt actgtggaag atcagcttgc acgtggactg aagctgacct tcgattcatc
361 cttctcacct aacactggga aaaaaaatgc taaaatcaag acagggtaca agcgggagca
421 cattaacctg ggctgcgaca tggatttcga cattgctggg ccttccatcc ggggtgctct
481 ggtgctaggt tacgagggct ggctggccgg ctaccagatg aattttgaga ctgcaaaatc
541 ccgagtgacc cagagcaact ttgcagttgg ctacaagact gatgaattcc agcttcacac
601 taatgtgaat gacgggacag agtttggcgg ctccatttac cagaaagtga acaagaagtt
661 ggagaccgct gtcaatcttg cctggacagc aggaaacagt aacacgcgct tcggaatagc
721 agccaagtat cagattgacc ctgacgcctg cttctcggct aaagtgaaca actccagcct
781 gataggttta ggatacactc agactctaaa gccaggtatt aaactgacac tgtcagctct
841 tctggatggc aagaacgtca atgctggtgg ccacaagctt ggtctaggac tggaatttca
901 agcataaatg aatactgtac aattgtttaa ttttaaacta ttttgcagca tagctacctt
961 cagaatttag tgtatctttt aatgttgtat gtctgggatg caagtattgc taaatatgtt
1021 agccctccag gttaaagttg attcagcttt aagatgttac ccttccagag gtacagaaga
1081 aacctatttc caaaaaaggt cctttcagtg gtagactcgg ggagaacttg gtggcccctt
1141 tgagatgcca ggtttctttt ttatctagaa atggctgcaa gtggaagcgg ataatatgta
1201 ggcactttgt aaattcatat tgagtaaatg aatgaaattg tgatttcctg agaatcgaac
1261 cttggttccc taaccctaat tgatgagagg ctcgctgctt gatggtgtgt acaaactcac
1321 ctgaatggga ctttttttag acagatcttc atgacctgtt cccaccccag ttcatcatca
1381 tctcttttac accaaaaggt ctgcagggtg tggtaactgt ttcttttgtg ccattttggg
1441 gtggagaagg tggatgtgat gaagccaata attcaggact tattccttct tgtgttgtgt
1501 tttttttttg cccttgcacc agagtatgaa atagcttcca ggagctccag ctataagctt
1561 ggaagtgtct gtgtgattgt aatcacatgg tgacaacact cagaatctaa attggacttc
1621 tgttgtattc tcaccactca atttgttttt tagcagttta atgggtacat tttagagtct
1681 tccattttgt tggaattaga tcctcccctt caaatgctgt aattaacaac acttaaaaaa
1741 cttgaataaa atattgaaac ctcaaaaaaa aaaaaaaaaa aaa
//