LOCUS BC089804 1714 bp mRNA linear ROD 15-JUL-2006
DEFINITION Rattus norvegicus chemokine (C-X-C motif) receptor 4, mRNA (cDNA
clone MGC:108696 IMAGE:7380432), complete cds.
ACCESSION BC089804
VERSION BC089804.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 1714)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1714)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Drs. Josef Lazar & Howard Jacob, Medical
College of Wisconsin
cDNA Library Preparation: Open Biosystems
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 216 Row: k Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 82617587.
FEATURES Location/Qualifiers
source 1..1714
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:108696 IMAGE:7380432"
/tissue_type="Thymus, rat"
/clone_lib="NIH_MGC_250"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..1714
/gene="Cxcr4"
/db_xref="GeneID:60628"
/db_xref="RGD:620465"
CDS 56..1105
/gene="Cxcr4"
/codon_start=1
/product="chemokine (C-X-C motif) receptor 4"
/protein_id="AAH89804.1"
/db_xref="GeneID:60628"
/db_xref="RGD:620465"
/translation="MEIYTSDNYSEEVGSGDYDSNKEPCFRDENENFNRIFLPTIYFI
IFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAMADWYFG
KFLCKAVHIIYTVNLYSSVLILAFISLDRYLAIVHATNSQRPRKLLAEKAVYVGVWIP
ALLLTIPDIIFADVSQGDGRYICDRLYPDSLWMVVFQFQHIMVGLILPGIVILSCYCI
IISKLSHSKGHQKRKALKTTVILILAFFACWLPYYVGISIDSFILLEVIKQGCEFESV
VHKWISITEALAFFHCCLNPILYAFLGAKFKSSAQHALNSMSRGSSLKILSKGKRGGH
SSVSTESESSSFHSS"
BASE COUNT 414 a 417 c 396 g 487 t
ORIGIN
1 cctctgaggc gtttggtgct ccggtagcta ccagggctgg agagcgagca ttgccatgga
61 aatatacact tcggataact actccgaaga agtagggtct ggagactatg actccaacaa
121 ggaaccctgc ttccgggatg aaaacgaaaa cttcaacagg atcttcctgc ccaccatcta
181 ttttatcatc ttcttgactg gcatagtggg caatgggttg gtaatcctgg tcatgggtta
241 ccagaagaag ctgaggagca tgacagacaa gtaccggctg cacctgtccg tggctgacct
301 cctctttgtc atcacactcc ccttctgggc agtggacgcc atggctgact ggtactttgg
361 gaaattttta tgtaaggctg tgcatatcat ctacaccgtc aacctttaca gcagtgttct
421 catcctggcc ttcatcagcc tggaccgcta ccttgccatt gtccacgcca ccaacagcca
481 gaggccgagg aagctgctgg ctgaaaaggc cgtctatgtg ggtgtctgga tccccgccct
541 cctcctgact atccctgaca tcatcttcgc cgatgtcagc cagggggacg gcaggtacat
601 ctgtgaccgc ctttaccccg acagcctgtg gatggtggtg ttccagttcc agcacatcat
661 ggtgggtctc atcctgccgg gcatcgtcat cctgtcctgt tactgcatca tcatctccaa
721 gctgtcacac tccaagggcc accagaagcg caaggccctc aagactacgg tcatccttat
781 cctggctttc tttgcctgct ggctaccgta ttacgtgggg atcagcatcg attccttcat
841 ccttttggag gtcatcaagc aaggatgtga gttcgagagc gtcgtgcaca agtggatctc
901 catcacggag gccctcgcct tcttccactg ttgcctgaac cccatcctct acgccttcct
961 cggggccaaa ttcaagagct ccgcgcagca tgcactcaat tccatgagca gaggctccag
1021 cctcaagatc ctttccaaag ggaaacgggg tggacactct tccgtctcca cagagtcaga
1081 atcctcaagt tttcactcca gctaacactt acgcaaagac atatataata tatatatata
1141 tatatatata tgacaaagaa ctttttttat gttacacatt tcccagatat aaaagactga
1201 ccaatcttgt acagtttttt ttattgactg ttggagttta tgtttctcta gtttttgtgt
1261 gtgtgtgtgt gtgtgaggtt tgacttaatt tatataaata ttggtttttt tctgttgttt
1321 gtctgtttca cgtgaatgag tgtctaggca ggacctgtgg ccaagttctt agtcgctgtg
1381 tgtctgtgtg taggactgta gagctgtaga ggaaggaact gaacgctcca gaatgtgtgg
1441 taaatcggat aaagctagaa gtgaccctca gctgtcgctg cataatctct tcgccccgcc
1501 caccccgttc ctgaattgtt tggttgtgct gtgtggtttc tctgtagaag atggcactta
1561 aaaccaaagc ctgaaatggt atagaaatgc tgggtttttt ctttcagttt tcaagggtgg
1621 attgatttca gtacctacaa atgtacagtc ttgtattatg ttgttaataa aagtcaatgg
1681 taaacttgaa aaaaaaaaaa aaaaaaaaaa aaaa
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