LOCUS BC089447 3415 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens proline-rich transmembrane protein 3, mRNA (cDNA clone
MGC:105134 IMAGE:30563721), complete cds.
ACCESSION BC089447
VERSION BC089447.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3415)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3415)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-FEB-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Mary Hendrix
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 201 Row: b Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 59709433.
FEATURES Location/Qualifiers
source 1..3415
/db_xref="H-InvDB:HIT000266290"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:105134 IMAGE:30563721"
/tissue_type="Chondrosarcoma Lung Metastasis"
/clone_lib="NIH_MGC_212"
/lab_host="DH10B"
/note="Vector: pYX-ASC"
gene 1..3415
/gene="PRRT3"
/gene_synonym="FLJ33674"
/db_xref="GeneID:285368"
/db_xref="HGNC:HGNC:26591"
CDS 111..3056
/gene="PRRT3"
/gene_synonym="FLJ33674"
/codon_start=1
/product="proline-rich transmembrane protein 3"
/protein_id="AAH89447.1"
/db_xref="GeneID:285368"
/db_xref="HGNC:HGNC:26591"
/translation="MASSPWGCVCGLLLLLLPLLGTGPALGRGFPRPLENSEIPMIPG
AHPKGSVGSEPQAFDVFPENPRADSHRNSDVRHAPAEEMPEKPVASPLGPALYGPKAA
QGAQRERLPVTDDLQMAQGPSSHGWTGPLDSQELLEQEAVAPHPVGHPHLTFIPTTPR
RQLRVATVPPSLQHEGQEGQWPPRDEGLKAKTKSRVPPTSPSDHQGPPHTLVSHSGTV
KRPVLEGQGGFEEHLQEAAQGPHFTQQDPAAPDVGSVPPVEVVYSQEPGAQPDLALAR
SLPPAEELPVETPKRAGAEVSWEVSSPGPPPKQADLPDAKDSPGPQPTDPPASEAPDR
PSKPERAAMNGADPISPQRVRGAVEAPGTPKSLIPGPSDPGPAVNRTESPMGALQPDE
AEEWPGRPQSHPPAPPVQAPSTSRRGLIRVTTQRALGQPPPPEPTASSMASAPASSPP
ANATAPPLRWGPLRRVLSFSWELHVYGVGVLFLLPALLALAALAAAPAGPRLALVAAV
LVLVASALRSAYMLTDPYGSQARLGVRGGLVLYNLPFPLLLTALAALTLLGLGAGLPP
PLQNPLLLGAVALVHGVGLLATDLLSTWSVLNLLTQGLSCAWGAAVALGTLCLCRRRL
LDGPRGWDASPGPRLLAVAGALGLLASGLQLAAALWLYPGPGRVGRFSWAWWGVHFWL
RLLELTWALALALAAVAAARPRPPTEHACWAKLMRLACPAPSGKSEVPERPNNCYAGP
SNVGAGSLDISKSLIRNPAESGQLATPSSGAWGSAASLGRGPQGGPGLSRNGVGPAPS
LSELDLRPPSPINLSRSIDAALFREHLVRDSVFQRCGLRGLASPPPGGALRPRRGSHP
KAELDDAGSSLLRGRCRSLSDVRVRGPVPQHVVEAPDGAAAAASGSSLDSFSRGSLKI
SWNPWRHGLSSVDSLPLDELPSTVQLLPAPTPAPDSTAARQGDGQGEVQPRGKPGESR
SASSDTIEL"
BASE COUNT 612 a 1165 c 1073 g 565 t
ORIGIN
1 gcgatcggct gcagggacgc gcgcaaggtg aacacggggg ctgcggcgcg caggctcatc
61 cagtgaggac tggaaggtgg gggctttagg cccaggcatc ggagtagacc atggcctcca
121 gcccatgggg ctgtgtatgt ggccttctgc tgttgctgct gccactcctg gggactggcc
181 ctgccctggg gaggggcttt cccaggccac ttgaaaactc cgaaatccct atgatccctg
241 gagcccaccc caagggctct gtgggctcag agccccaggc ctttgacgtg ttcccggaga
301 accccagagc tgacagtcac aggaactctg atgtccgcca cgcccctgct gaagagatgc
361 ctgagaagcc tgtagcctct ccccttggcc cagccctgta cgggcccaaa gcagcacaag
421 gagctcagag agaacgactc ccagtaactg atgacctcca gatggctcaa ggaccaagct
481 cccacggctg gacaggacct ctggactcac aagagcttct ggagcaagaa gcagtggctc
541 cccacccagt gggccaccct catctcactt tcatccccac aactcccaga cgtcaactca
601 gggtagccac agttcctccc tccctgcagc atgaaggcca agagggacag tggccaccta
661 gagatgaggg tctgaaggcc aaaactaaga gcagggtccc acccacttct ccctcagacc
721 accagggccc accccacacc cttgtttccc actcaggtac tgtcaagagg ccagtgctgg
781 aaggacaggg tgggtttgag gaacacttgc aggaggcagc tcaaggtccc cacttcaccc
841 agcaggatcc agcagcccct gatgttggct cagtaccccc agttgaggtg gtgtactctc
901 aggagccagg ggcccagcca gacttggcat tggccagaag ccttcctcct gctgaggagc
961 tgccggttga gacccccaag agggctggcg ctgaggtgtc ctgggaagtc agctccccag
1021 gtcccccgcc caagcaggct gaccttcctg acgctaagga ttcaccagga ccccagccca
1081 cggatccacc cgcctcagag gctcctgatc ggccgtctaa gccagagaga gcagcaatga
1141 atggagcaga ccccatctcc ccccagcggg tgagaggagc tgtggaggcc ccaggcaccc
1201 ccaagtctct catccctggt ccctcagacc ctggcccagc tgtaaaccga acagagagcc
1261 ccatgggggc cctgcagcca gatgaagccg aggagtggcc ggggcgcccc caaagccatc
1321 ccccagcacc cccagtccag gcgccctcga cgtcacgccg gggcctcatt cgagtcacca
1381 cgcagcgagc cctgggccag cctccccctc cggagcccac cgccagctcc atggcttcag
1441 ccccagcctc cagcccccca gccaacgcca ctgcaccccc gctacgctgg ggcccccttc
1501 ggcgggtcct gagcttctcc tgggagctgc acgtctacgg ggtgggggta ctctttctgc
1561 tgcccgcgtt gttggcgctg gctgcgctgg cagccgcccc agcagggccc cggctggcat
1621 tggtggccgc ggtgctggtg ctcgtggctt cggcgctgcg atccgcctac atgcttaccg
1681 acccttacgg ctcgcaggcg cggctgggcg ttcgcggggg cctggtgctc tacaacctgc
1741 ccttcccctt gctgcttacg gcgctggcag ccctgactct gctcggcctg ggcgcggggc
1801 tgccgccacc gctgcaaaac ccactcctgc tgggagcagt ggcgctggtg catggtgtag
1861 ggttgctcgc gacagacctg ctgtccacat ggtctgtgct caacctcctg acgcagggct
1921 tgtcgtgcgc ctggggcgcg gccgtggctc tgggcacgct ctgcctgtgc cgtcgccgcc
1981 tgctggacgg cccacggggc tgggatgcca gcccgggccc tcggctgttg gctgtggcgg
2041 gcgcgctggg gctgctggct agcggcttgc agctggcggc tgcgctctgg ctgtacccgg
2101 gcccaggccg cgtgggccgc ttctcgtggg cctggtgggg tgtccacttc tggctgcgcc
2161 tcctggagct gacatgggcg ctcgccctgg cgttggccgc ggtggctgcc gcgagaccca
2221 ggccgcccac ggagcacgct tgctgggcta agctgatgcg tctggcgtgc ccggcgccgt
2281 caggaaagag cgaggtgccg gagcgaccca ataactgcta tgcagggccc agcaacgttg
2341 gtgcaggcag cttggacatc agcaagagcc tcatccgcaa cccggcggag agtgggcagc
2401 tggccacgcc cagttcaggc gcctggggct cggctgcgtc gttgggtcgc ggaccccagg
2461 gtggcccggg actgtcccgc aacggtgtgg gaccggcgcc atcgctgagc gagctggatc
2521 tgcggccgcc atcgcccatc aacctgagcc gcagcatcga cgccgcgctc ttccgcgagc
2581 acctagtgcg agacagtgtg ttccagcgct gcggcctccg cggcctggcc tccccgccgc
2641 ctggaggcgc tctgcggccg cgccggggca gccatcccaa agccgagctc gacgacgctg
2701 gctcctcgct cctccgcggc cgctgcaggt cgctcagcga cgtgcgcgtg cgcgggccgg
2761 tcccacagca cgtagtggaa gcacccgacg gggcagccgc tgcggcttct ggcagctccc
2821 tcgacagctt ctccaggggt tcactcaaga tcagttggaa cccctggcgc cacgggctgt
2881 catcagtgga cagtctgccc ctagatgagt tgcccagcac ggtacagcta ctgcctgccc
2941 cgaccccagc ccctgattct accgccgctc ggcaggggga cggccaggga gaggtccagc
3001 cgcgcggcaa gcctggggaa tcccgcagcg cctccagtga taccatcgag ctttgaagag
3061 cggtcctgac gcagggccag gaccctgccc gatgcccaca tggcatggcc tactgggaca
3121 gttgagcctt taaaaaatgg gcatcctggc caggcgcggt ggctcacgcc aggaatccca
3181 gcactttggg aggccgagcc ggcattttgc acagaggccg tgtcttatgc ggaatacagg
3241 gtgggtgtgc atggattcgg gcatgaagaa cagggagcag gtgccccaga ctccccaacg
3301 tggagtgatg agcctcgctt gtctagattg tcctctttgt gccaaagaaa taaaccctta
3361 ggacttggaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
//