LOCUS BC088835 1028 bp mRNA linear ROD 15-JUL-2006
DEFINITION Mus musculus H3 histone, family 3A, mRNA (cDNA clone MGC:102536
IMAGE:6437687), complete cds.
ACCESSION BC088835
VERSION BC088835.1
KEYWORDS MGC.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1028)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1028)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-JAN-2005) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Gilbert Smith, Ph.D.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 194 Row: f Column: 6
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31982294.
FEATURES Location/Qualifiers
source 1..1028
/organism="Mus musculus"
/mol_type="mRNA"
/strain="FVB/N-3"
/db_xref="taxon:10090"
/clone="MGC:102536 IMAGE:6437687"
/tissue_type="Mammary tumor. MMTV-LTR/INT3 model. 5 month
old mouse. Taken by biopsy."
/clone_lib="NCI_CGAP_Mam2"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1028
/gene="H3f3a"
/gene_synonym="H3.3A"
/db_xref="GeneID:15078"
/db_xref="MGI:MGI:1097686"
CDS 94..504
/gene="H3f3a"
/gene_synonym="H3.3A"
/codon_start=1
/product="H3 histone, family 3A"
/protein_id="AAH88835.1"
/db_xref="GeneID:15078"
/db_xref="MGI:MGI:1097686"
/translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP
GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV
GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA"
BASE COUNT 298 a 223 c 216 g 291 t
ORIGIN
1 cgcgccgctg ccgctctcca acgccagcgc cgcctctcgc ttgccgagct ccagccgaag
61 gagaaggggg gtaagtaagg aggtgtcctt accatggctc gtacaaagca gactgcccgc
121 aaatccaccg gtggtaaagc acccaggaaa caactggcta caaaagccgc tcgcaagagt
181 gcgccctcta ctggaggggt gaagaaacct catcgttaca ggcctggtac tgtggccctc
241 cgtgaaatca gacgctatca gaagtccact gaacttctga tccgcaagct cccctttcag
301 cgtctggtgc gagaaattgc tcaggacttc aaaacagatc tgcgcttcca gagtgcagct
361 attggtgctt tgcaggaggc aagtgaggcc tatctggttg gcctttttga agataccaat
421 ctgtgtgcta tccatgccaa acgtgtaaca attatgccaa aagatatcca gctagcacgc
481 cgcatacgcg gagaacgtgc ttaagagtcc actatgaggg gaaacatttc attctcaaaa
541 aaattttttt tcctcttctt cctgttatca gtagttctga atgttagata ttttttccat
601 ggggtcaaag gtacctaagt atatgattgc gagtggaaac ataggggaca gaatcaggta
661 ttggcgtttc tccacgttca tttgtgtgtg aatttttaat ataaatgcaa gatggaaagc
721 attaatgcaa gcaaaatgtt tcagtgaaca catttcaaca gttcaacttt ataacaatta
781 taaataaacc tgttaaaatt ttctggacaa tgccagcatt tggatttttt taaaataagt
841 aaatttctta ttgacggcaa ctaaatggtg tttgtagcat ttttatcaca cagtagattc
901 catccattca ctatactttt ctaactgagt tgtcctacat acaagtacat gtttttaatg
961 ttgtcagtct tctgtgctgt tcctgtaagt ttgctattaa aatacattaa actaaaaaaa
1021 aaaaaaaa
//