LOCUS BC087834 2102 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens suppressor of variegation 4-20 homolog 1 (Drosophila),
mRNA (cDNA clone IMAGE:6500175), complete cds.
ACCESSION BC087834
VERSION BC087834.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2102)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2102)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (20-DEC-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 196 Row: d Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50659083
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..2102
/db_xref="H-InvDB:HIT000266156"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6500175"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2102
/gene="SUV420H1"
/gene_synonym="CGI-85"
/gene_synonym="MGC21161"
/gene_synonym="MGC703"
/db_xref="GeneID:51111"
/db_xref="HGNC:HGNC:24283"
CDS 226..1407
/gene="SUV420H1"
/gene_synonym="CGI-85"
/gene_synonym="MGC21161"
/gene_synonym="MGC703"
/codon_start=1
/product="suppressor of variegation 4-20 homolog 1
(Drosophila)"
/protein_id="AAH87834.1"
/db_xref="GeneID:51111"
/db_xref="HGNC:HGNC:24283"
/translation="MKWLGESKNMVVNGRRNGGKLSNDHQQNQSKLQHTGKDTLKAGK
NAVERRSNRCNGNSGFEGQSRYVPSSGMSAKELCENDDLATSLVLDPYLGFQTHKMNT
SAFPSRSSRHFSKSDSFSHNNPVRFRPIKGRQEELKEVIERFKKDEHLEKAFKCLTSG
EWARHYFLNKNKMQEKLFKEHVFIYLRMFATDSGFEILPCNRYSSEQNGAKIVATKEW
KRNDKIELLVGCIAELSEIEENMLLRHGENDFSVMYSTRKNCAQLWLGPAAFINHDCR
PNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEFCECYTCERRGTGAFKS
RVGLPAPAPVINSKYGLRETDKRLNRLKKLGDSSKNSDSQSVSSNTDADTTQEKNNAS
K"
BASE COUNT 666 a 375 c 513 g 548 t
ORIGIN
1 ttactctcca tttttctctg gaattatttt tggtgattaa ttttctgggg gggactggga
61 cgcggggccc ggcggcgcgg ccccgcatcg cagcggccgg gcagcggggc ctgggacgcg
121 ccccgaggag gagcggggcg gcgcaggcgg agagaacatt gaaagtattc tctaagctat
181 ttgaagagag tgactaaatg cacctgggtc aggctgtctg tgggtatgaa gtggttggga
241 gaatccaaga acatggtggt gaatggcagg agaaatggag gcaagttgtc taatgaccat
301 cagcagaatc aatcaaaatt acagcacacg gggaaggaca ccctgaaggc tggcaaaaat
361 gcagttgaga ggaggtcgaa cagatgtaat ggtaactcgg gatttgaagg acagagtcgc
421 tatgtaccat cctctggaat gtccgccaag gaactctgtg aaaatgatga cctagcaacc
481 agtttggttc ttgatcccta tttaggtttt caaacacaca aaatgaatac tagcgccttt
541 ccttcgagga gctcaaggca tttttcaaaa tctgacagtt tttctcacaa caaccctgtg
601 agatttaggc ctattaaagg aaggcaggaa gaactaaagg aagtaattga acgttttaag
661 aaagatgaac acttggagaa agccttcaaa tgtttgactt caggcgaatg ggcacggcac
721 tattttctca acaagaataa aatgcaggag aaattattca aagaacatgt atttatttat
781 ttgcgaatgt ttgcaactga cagtggattt gaaatattgc catgtaatag atactcatca
841 gaacaaaatg gagccaaaat agttgcaaca aaagagtgga aacgaaatga caaaatagaa
901 ttactggtgg gttgtattgc cgaactttca gaaattgagg agaacatgct acttagacat
961 ggagaaaacg acttcagtgt catgtactcc acaaggaaaa actgtgctca actctggctg
1021 ggtcctgctg cgtttataaa ccatgattgc agacctaatt gtaagtttgt gtcaactggt
1081 cgagatacag catgtgtgaa ggctctaaga gacattgaac ctggagaaga aatttcttgt
1141 tattatggag atgggttctt tggagaaaat aatgagttct gcgagtgtta cacttgcgaa
1201 agacggggca ctggtgcttt taaatccaga gtgggactgc ctgcgcctgc tcctgttatc
1261 aatagcaaat atggactcag agaaacagat aaacgtttaa ataggcttaa aaagttaggt
1321 gacagcagca aaaattcaga cagtcaatct gtcagctcta acactgatgc agataccact
1381 caggaaaaaa acaatgcaag taagtaaggg agatttgata agcatatctt ttaaaagtat
1441 tttcacacaa tttgctttat aaagtgtgct tcagtagttt taaactttta aatactcaga
1501 gagactggga cttgtgagct ttggctgcac ttcaaggctc tagacgtgat ttgagtagag
1561 gcacagtctg tatcccatct ctaacttcag taccgtcctc tagactattt ttcttgaata
1621 ccttggtaac tggatatgag ttcttcatca tatgttccaa ggtcatcata tgttttaaac
1681 attttcaagg tgttagagac tgtgatgatg tcgctaagtc ctgcaagaag acaaaaggac
1741 tgagtagaat taaattagac tctatacatt ccagtgccta gccagtttgt tagaaaagat
1801 gatggacttg gggaattcat agcttctggc cttaaggctt ccaccttttc attgcttgct
1861 gacctttttc aaaacgaact gactcagttc agcagaccac cagtaccaga ctcagaattg
1921 tgatagagga gcattttgaa cagtgccgta ttgtgacatg ctgtattggc tactccagaa
1981 agtaggagta aagatggaaa ggagaaagaa gcaacctctg agattccagt ggtgtgtggg
2041 ggcaagatct gatggaaact gaaaaagaga acgaagacta aacaaagaaa aaaaaaaaaa
2101 aa
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