LOCUS BC086875 3358 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens family with sequence similarity 13, member A, mRNA
(cDNA clone MGC:105131 IMAGE:30708091), complete cds.
ACCESSION BC086875
VERSION BC086875.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3358)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3358)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-DEC-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Martin, University of Iowa
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 201 Row: b Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 62865868.
FEATURES Location/Qualifiers
source 1..3358
/db_xref="H-InvDB:HIT000266147"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:105131 IMAGE:30708091"
/tissue_type="Chondrosarcoma, myxoid chondrosarcoma Grade
II, mixture of 3 cell lines, enriched for 4-5 Kb mRNA"
/clone_lib="NIH_MGC_221"
/lab_host="DH10B"
/note="Vector: pYX-ASC"
gene 1..3358
/gene="FAM13A"
/db_xref="GeneID:10144"
/db_xref="HGNC:HGNC:19367"
CDS 199..2250
/gene="FAM13A"
/codon_start=1
/product="FAM13A protein"
/protein_id="AAH86875.1"
/db_xref="GeneID:10144"
/db_xref="HGNC:HGNC:19367"
/translation="MACEIMPLQSAHVPQVSNVSATGELLERTIRSAVEQHLFDVNNS
GGQSSEDSESGTLSASSATSARQRRRQSKEQDEVRHGRDKGLINKENTPSGFNHLDDC
ILNTQEVEKVHKNTFGCAGERSKPKRQKSSTKLSELHDNQDGLVNMESLNSTRSHERT
GPDDFEWMSDERKGNEKDGGHTQHFESPTMKIQEHPSLSDTKQQRNQDAGDQEESFVS
EVPQSDLTALCDEKNWEEPIPAFSSWQRENSDSDEAHLSPQAGRLIRQLLDEDSDPML
SPRFYAYGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPAQLTRRIQS
LKKKIRKFEDRFEEEKKYRPSHSDKAANPEVLKWTNDLAKFRRQLKESKLKISEEDLT
PRMRQRSNTLPKSFGSQLEKEDEKKQELVDKAIKPSIEATLESIQRKLQEKRAESSRP
EDIKDMTKDQIANEKVALQKALLYYESIHGRPVTKNERQVMKPLYDRYRLVKQILSRA
NTIPIIGSPSSKRRSPLLQPIIEGETASFFKEIKEEEEGSEDDSNVKPDFMVTLKTDF
SARCFLDQFEDDADGFISPMDDKIPSKCSQDTGLSNLHAASIPELLEHLQEMREEKKR
IRKKLRDFEDNFFRQNGRNVQKEDRTPMAEEYSEYKHIKAKLRLLEVLISKRDTDSKS
M"
BASE COUNT 1020 a 797 c 807 g 734 t
ORIGIN
1 cattgcctga agaagtttgg aggctgagag cagcagtaga ctggccaact gcagagcaag
61 ttgtttctcc agccgtgcgg tgcagcctca tgcccccaac ccagcttagc cactgtaaga
121 agacgttcac tgtacagacg accaaacttg ccgtggaaga gacagttgtg agattccctt
181 gcaaatttac atacgagaat ggcttgtgaa atcatgcctc tgcaaagtgc tcatgtaccc
241 caagtcagca atgtgtctgc aaccggagaa ctcttagaaa gaaccatccg atcagctgta
301 gaacaacatc tttttgatgt taataactct ggaggtcaaa gttcagagga ctcagaatct
361 ggaacactat cagcatcttc tgccacatct gccagacagc gccgccgcca gtccaaggag
421 caggatgaag ttcgacatgg gagagacaag ggacttatca acaaagaaaa tactccttct
481 gggttcaacc accttgatga ttgtattttg aatactcagg aagtcgaaaa ggtacacaaa
541 aatacttttg gttgtgctgg agaaaggagc aagcctaaac gtcagaaatc cagtactaaa
601 ctttctgagc ttcatgacaa tcaggacggt cttgtgaata tggaaagtct caattccaca
661 cgatctcatg agagaactgg acctgatgat tttgaatgga tgtctgatga aaggaaagga
721 aatgaaaaag atggtggaca cactcagcat tttgagagcc ccacaatgaa gatccaggag
781 catcccagcc tatctgacac caaacagcag agaaatcaag atgccggtga ccaggaggag
841 agctttgtct ccgaagtgcc ccagtcggac ctgactgcat tgtgtgatga aaagaactgg
901 gaagagccta tccctgcttt ctcctcctgg cagcgggaga acagtgactc tgatgaagcc
961 cacctctcgc cgcaggctgg gcgcctgatc cgtcagctgc tggacgaaga cagcgacccc
1021 atgctctctc ctcggttcta cgcttatggg cagagcaggc aatacctgga tgacacagaa
1081 gtgcctcctt ccccaccaaa ctcccattct ttcatgaggc ggcgaagctc ctctctgggg
1141 tcctatgatg atgagcaaga ggacctgaca cctgcccagc tcacacgaag gattcagagc
1201 cttaaaaaga agatccggaa gtttgaagat agattcgaag aagagaagaa gtacagacct
1261 tcccacagtg acaaagcagc caatccagag gttctgaaat ggacaaatga ccttgccaaa
1321 ttccggagac aacttaaaga atcaaaacta aagatatctg aagaggacct aactcccagg
1381 atgcggcagc gaagcaacac actccccaag agttttggtt cccaacttga gaaagaagat
1441 gagaagaagc aagagctggt ggataaagca ataaagccca gtattgaagc cacattggaa
1501 tctattcaga ggaagctcca ggagaagcga gcggaaagca gccgccctga ggacattaag
1561 gatatgacca aagaccagat tgctaatgag aaagtggctc tgcagaaagc tctgttatat
1621 tatgaaagca ttcatggacg gccggtaaca aagaacgaac ggcaggtgat gaagccacta
1681 tacgacaggt accggctggt caaacagatc ctctcccgag ctaacaccat acccatcatt
1741 ggttccccct ccagcaagcg gagaagccct ttgctgcagc caattatcga gggcgaaact
1801 gcttccttct tcaaggagat aaaggaagaa gaggaggggt cagaagacga tagcaatgtg
1861 aagccagact tcatggtcac tctgaaaacc gatttcagtg cacgatgctt tctggatcaa
1921 ttcgaagatg acgctgatgg atttatttcc ccaatggatg ataaaatacc atcaaaatgc
1981 agccaggaca cagggctttc aaatctccat gctgcctcaa tacctgaact cctggaacac
2041 ctccaggaaa tgagagaaga aaagaaaagg attcgaaaga aacttcggga ttttgaagac
2101 aactttttca gacagaatgg aagaaatgtc cagaaggaag accgcactcc tatggctgaa
2161 gaatacagtg aatataagca cataaaggcg aaactgaggc tcctggaggt gctcatcagc
2221 aagagagaca ctgattccaa gtccatgtga ggggcatggc caagcacagg gggccggcag
2281 ctgcggtgag agtttactgt ccccagagaa agtgcagctc tggaaggcag ccttggggct
2341 ggccctgcaa agcatgcagc ccttctgcct ctagaccatt tggcatcggc tcctgtttcc
2401 attgcctgcc ttagaaactg gctggaagaa gacaatgtga cctgacttag gcattttgta
2461 attggaaagt caagactgca gtatgtgcac atgcgcacgc gcatgcacgc acacacacac
2521 acagtagtgg agctttccta acactagcag agattaatca ctacattaga caacactcat
2581 ctacagagaa tatacactgt tcttccctgg ataactgaga aacaagagac cattctctgt
2641 ctaactgtga taaaaacaag ctcaggactt tattctatag agcaaacttg ctgtggaggg
2701 ccatgctctc cttggaccca gttaactgca aacgtgcatt ggagccctat ttgctgccgc
2761 tgccattcta gtgacctttc cacagagctg cgccttcctc acgtgtgtga aaggttttcc
2821 ccttcagccc tcaggtagat ggaagctgca tctgcccacg atggcagtgc agtcatcatc
2881 ttcaggatgt ttcttcagga cttcctcagc tgacaaggaa ttttggtccc tgcctaggac
2941 cgggtcatct gcagaggaca gagagatggt aagcagctgt atgaatgctg attttaaaac
3001 caggtcatgg gagaagagcc tggagattct ttcctgaaca ctgactgcac ttaccagtct
3061 gattttatcg tcaaacacca agccaggcta gcatgctcat ggcaatctgt ttggggctgt
3121 tttgttgtgg cactagccaa acataaaggg gcttaagtca gcctgcatac agaggatcgg
3181 ggagagaagg ggcctgtgtt ctcagcctcc tgagtactta ccagagttta atttttttaa
3241 aaaaaatctg cactaaaatc cccaaactga caggtaaatg tagccctcag agctcagccc
3301 aaggcagaat ctaaatcaca ctattttcga gatcatgtat aaaaaaaaaa aaaaaaaa
//