LOCUS BC085765 3571 bp mRNA linear ROD 18-MAR-2009
DEFINITION Rattus norvegicus poly (ADP-ribose) polymerase 1, mRNA (cDNA clone
MGC:93658 IMAGE:7107130), complete cds.
ACCESSION BC085765
VERSION BC085765.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 3571)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3571)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Howard Jacobs
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 181 Row: e Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55742841.
FEATURES Location/Qualifiers
source 1..3571
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:93658 IMAGE:7107130"
/tissue_type="Kidney, rat (Brown Norway)"
/clone_lib="NIH_MGC_235"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..3571
/gene="Parp1"
/gene_synonym="Adprt"
/gene_synonym="Parp-1"
/db_xref="GeneID:25591"
/db_xref="RATMAP:44327"
/db_xref="RGD:2053"
CDS 63..3107
/gene="Parp1"
/gene_synonym="Adprt"
/gene_synonym="Parp-1"
/codon_start=1
/product="poly (ADP-ribose) polymerase 1"
/protein_id="AAH85765.1"
/db_xref="GeneID:25591"
/db_xref="RATMAP:44327"
/db_xref="RGD:2053"
/translation="MAEATERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMF
DGKVPHWYHFSCFWKVGHSIRQPDTEVDGFSELRWDDQQKVKKTAEAGGVAGKGQHGG
GGKAEKTLGDFAAEYAKSNRSTCKGCMEKIEKGQMRLSKKMLDPEKPQLGMIDRWYHP
TCFVKNRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAVKSEGKRKCDEVDGIDE
VAKKKSKKGKDKESSKLEKALKAQNELVWNIKDELKKACSTNDLKELLIFNQQQVPSG
ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW
VTPKEFREISYLKKLKIKKQDRLFPPESSAPAPPAPPVSITSAPTAVNSSAPADKPLS
NMKILTLGKLSQNKDEAKAMIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA
NVRVVCEDFLQDVSASAKSLQELLSAHSLSSWGAEVKVEPGEVVVPKGKSAAPSKKSK
GAVKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT
NSYYKLQLLESDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMKLYEEKTGN
AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLAVKPGTKSKLPKPVQELVGMIFDVESM
KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGSSESQILDLSNRFYTLI
PHDFGMKKPPLLNNTDSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK
TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN
RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD
PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTAPDPSASITLDGVEVPLG
TGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW"
BASE COUNT 994 a 861 c 1014 g 702 t
ORIGIN
1 cgacacgtta gcggagcgga ccggcggcgg cgtctgcctg ccgctgcggc acgagaggga
61 ggatggcgga ggccacggag aggctttacc gagtggagta cgctaagagc gggcgcgcct
121 cttgcaagaa atgcagcgag agtatcccca aggactcgct ccgcatggcc atcatggtgc
181 agtcacccat gttcgatgga aaagtcccac actggtatca cttctcctgc ttctggaagg
241 tgggccactc catccggcag cctgacacag aggtggacgg gttctctgag ctgcggtggg
301 atgaccagca gaaggtcaag aagaccgcag aggctggagg cgtggcaggc aaaggccagc
361 atggaggtgg cggcaaggcg gagaagacgc tgggcgactt tgcggcagag tatgccaagt
421 ccaacaggag cacatgcaag ggctgcatgg agaagataga gaagggtcag atgcgcctgt
481 ccaagaagat gctggatcca gagaagccgc aactgggtat gattgaccgc tggtaccatc
541 caacttgctt tgtcaagaac cgggacgagc tgggcttccg gcctgagtac agtgccagcc
601 agctcaaggg ctttagcctc ctctctgcag aagacaaaga agctctgaag aagcagctcc
661 cggcagtcaa gagtgaagga aagagaaaat gtgacgaggt ggatggaata gatgaagtag
721 ccaaaaagaa atctaaaaaa ggaaaggaca aggagagtag taaactggaa aaggcgctca
781 aggctcagaa cgagctggtc tggaatatca aagatgagct gaagaaagcc tgctccacca
841 acgacctgaa ggagttgctc atcttcaacc agcagcaagt accatctgga gagtccgcaa
901 tcctggaccg agttgctgat ggcatggcgt ttggggccct tctgccctgc aaggagtgtt
961 caggacagct ggtttttaag agcgacgctt attactgtac tggggatgtc actgcctgga
1021 ccaagtgcat ggtcaagaca cagaatccca gccgaaagga atgggtaact ccaaaggaat
1081 tccgagaaat atcctacctc aagaaattaa agatcaaaaa gcaggaccgg ctgttccctc
1141 cagagagcag cgccccagca ccaccagcac ctcccgtctc gatcacctcc gcacccacag
1201 ctgtgaactc ctctgcacca gcagacaaac ccctgtctaa catgaagatc ctgactcttg
1261 gtaagctctc ccagaacaag gacgaagcaa aggccatgat tgagaaactc ggaggcaagc
1321 tgacaggatc tgccaacaag gcctccttgt gtatcagcac taagaaggag gtggagaaga
1381 tgagtaagaa gatggaggaa gtgaaagcag ccaatgttcg agtcgtgtgt gaggacttcc
1441 tccaggatgt gtctgcctca gctaagagcc tccaagagct gctctcagcc catagcttgt
1501 cctcgtgggg ggctgaggtg aaggtagagc ctggtgaagt ggtggtcccc aaggggaagt
1561 cagctgcacc ctccaagaag agcaagggtg ctgtcaagga ggaaggtgtc aacaagtctg
1621 aaaagaggat gaaactaact ctgaagggag gagcagccgt tgatcctgac tctggtctgg
1681 aacactctgc acatgtcctg gagaaaggcg ggaaggtgtt cagtgccacg cttggcctgg
1741 tggacattgt gaaagggact aactcctatt acaaactgca acttctggag tccgacaagg
1801 agagcaggta ttggatcttc cggtcctggg gccgagtggg cacagttatc ggcagtaaca
1861 agcttgagca gatgccgtcc aaagaggatg ctgttgaaca cttcatgaag ttatacgaag
1921 agaagactgg aaatgcctgg cactcgaaaa acttcacaaa gtatcccaag aagttctacc
1981 ctctggagat tgactatggc caggacgaag aggcagtaaa gaagctggcg gtgaagcctg
2041 gcactaagtc gaagctgccg aagccggtgc aggagctcgt cgggatgatc ttcgacgtgg
2101 agagcatgaa gaaggccttg gtggagtacg agattgacct tcagaagatg cccttgggga
2161 aactgagcag aaggcagatc caggccgcct actctatcct cagtgaggtc cagcaggcag
2221 tgtcccaagg cagcagtgaa tctcagatcc tggatctctc caatcgcttc tacaccctca
2281 tcccccatga ctttggaatg aagaagcccc cacttctgaa caacacagac agtgtgcagg
2341 ccaaggtgga gatgctggac aacctcctgg acatcgaggt tgcctatagt cttctcaggg
2401 gtgggtctga tgacagcagt aaggacccca tcgatgtcaa ctatgagaag ctcaaaactg
2461 acattaaggt ggttgacaga gattctgaag aggctgaggt catcaggaag tatgtgaaga
2521 acactcacgc gaccacgcac aatgcctatg acctggaagt gatagacatc tttaagatag
2581 agcgagaggg agagagccaa cgctacaagc ccttcaggca gcttcacaac cggagactgc
2641 tgtggcacgg gtccaggacc accaacttcg caggcatcct gtcacagggt ctgcggatag
2701 ccccacctga agcacctgtg acaggctaca tgtttgggaa aggaatctac tttgctgata
2761 tggtgtccaa aagtgcgaac tactgccaca cgtctcaggg agacccgatt ggcttaatac
2821 tgttgggaga agttgccctt ggaaacatgt acgaactcaa gcatgcttct cacatcagca
2881 agttacccaa gggcaagcac agtgtcaaag gtttgggcaa aaccgcccct gacccttcgg
2941 ccagcatcac cctggatggt gtagaggttc cgctgggaac agggattccg tctggtgtta
3001 atgacacctg cctgctgtat aacgagtaca ttgtctacga cattgctcag gtgaatctga
3061 agtacctact gaaactgaag ttcaatttca agacctcctt gtggtagagt gaaggcgggc
3121 tttgccagca cccggggcct aggggataat gcccctagtg cctctgcacc aaacaccaca
3181 acacctcagc catgctgccg cctcagggtg gcaccctcac cgaatctcct taggaaggac
3241 tttacacaga taggttgcgc tggagtggga cggctgtttg tggtttgtcc aaccaggcac
3301 agccgtgaca gacagctggc agtagaggga aagttgggga gaggtttttg ttgtttgcct
3361 agactagtcc tgagggaaga aaccgccacg tcacagtcac aatgtctgcc ttactggctt
3421 ccccagggaa ggaaaatgtg cttcctccct tctttcaagg gttcatcttt ggtttgattt
3481 tggcaaaatg ttaagcattt attttgagct aaaaaataaa aactaatttc atactaaaaa
3541 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//