LOCUS BC085613 3261 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens SH3 domain containing 19, mRNA (cDNA clone
IMAGE:30707975), partial cds.
ACCESSION BC085613
VERSION BC085613.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3261)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3261)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: James Martin, University of Iowa
cDNA Library Preparation: M. Bento Soares, University of Iowa
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 201 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 57222241.
FEATURES Location/Qualifiers
source 1..3261
/db_xref="H-InvDB:HIT000266118"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:30707975"
/tissue_type="Chondrosarcoma, myxoid chondrosarcoma Grade
II, mixture of 3 cell lines, enriched for 4-5 Kb mRNA"
/clone_lib="NIH_MGC_221"
/lab_host="DH10B"
/note="Vector: pYX-ASC"
gene <1..3261
/gene="SH3D19"
/gene_synonym="EBP"
/gene_synonym="EVE1"
/gene_synonym="Kryn"
/gene_synonym="SH3P19"
/db_xref="GeneID:152503"
/db_xref="HGNC:HGNC:30418"
/db_xref="MIM:608674"
CDS <1..1442
/gene="SH3D19"
/gene_synonym="EBP"
/gene_synonym="EVE1"
/gene_synonym="Kryn"
/gene_synonym="SH3P19"
/codon_start=3
/product="SH3D19 protein"
/protein_id="AAH85613.2"
/db_xref="GeneID:152503"
/db_xref="HGNC:HGNC:30418"
/db_xref="MIM:608674"
/translation="QTGGFVRVPPRLPPRPVNGKTIPTQQPPTKVPPERPPPPKLSAT
RRSNKKLPFNRSSSDMDLQKKQSNLATGLSKAKSQVFKNQDPVLPPRPKPGHPLYSKY
MLSVPHGIANEDIVSQNPGELSCKRGDVLVMLKQTENNYLECQKGEDTGRVHLSQMKI
ITPLDEHLRSRPNDPSHAQKPVDSGAPHAVVLHDFPAEQVDDLNLTSGEIVYLLEKID
TDWYRGNCRNQIGIFPANYVKVIIDIPEGGNGKRECVSSHCVKGSRCVARFEYIGEQK
DELSFSEGEIIILKEYVNEEWARGEVRGRTGIFPLNFVEPVEDYPTSGANVLSTKVPL
KTKKEDSGSNSQVNSLPAEWCEALHSFTAETSDDLSFKRGDRIQILERLDSDWCRGRL
QDREGIFPAVFVRPCPAEAKSMLAIVPKGRKAKALYDFRGENEDELSFKAGDIITELE
SVDDDWMSGELMGKSGIFPKNYIQFLQIS"
BASE COUNT 1052 a 610 c 645 g 954 t
ORIGIN
1 gtcaaacagg aggttttgtg cgagtacccc caaggttgcc accgagacct gtgaatggaa
61 aaaccattcc aactcaacag cctccaacca aggtgccccc tgagagacca cctcccccaa
121 agctttctgc aaccagaaga tctaataaga aactgccttt taatcgatcc tcttctgaca
181 tggatcttca gaaaaaacaa agtaacttgg caactggact ctcaaaagcc aagagtcaag
241 tttttaaaaa tcaagatccg gtgctacccc ctcgtcccaa accaggacac cctctctaca
301 gtaaatacat gctgtctgtg cctcatggaa ttgccaatga agatattgtc tctcaaaacc
361 ccggagaact ctcttgtaag cgtggggatg tacttgtgat gctgaagcag acggaaaata
421 attacttgga gtgccaaaag ggagaagaca ctggcagagt tcacctgtct caaatgaaga
481 ttatcactcc acttgatgaa catcttagaa gcagaccaaa cgatccaagc cacgctcaga
541 agcctgttga cagtggtgct cctcatgctg tcgttcttca tgatttccca gcagagcaag
601 ttgatgattt gaacctcact tctggagaaa ttgtttatct tctggagaag atagatacag
661 attggtacag agggaactgt agaaaccaga ttggcatatt tcctgccaac tatgtcaaag
721 tgattattga tatcccagaa ggaggaaatg ggaaaagaga atgtgtttca tctcattgtg
781 ttaaaggctc aagatgtgtt gctcggtttg aatatattgg agagcagaag gatgagttga
841 gtttctcaga gggagaaatt attattctta aagagtatgt gaatgaggaa tgggccagag
901 gagaagttcg aggcagaact gggattttcc ccctgaactt tgtggagcct gttgaggatt
961 atcccacctc tggtgcaaat gttttaagca caaaggtacc actgaaaacc aaaaaagaag
1021 attctggctc aaactctcag gttaacagtc ttccggcaga atggtgtgaa gctcttcaca
1081 gttttacagc agagaccagt gatgacttat cattcaagag gggagaccgg atccagattc
1141 tggaacgtct ggattctgac tggtgcaggg gcagactgca ggacagggag gggatcttcc
1201 cagcagtgtt tgtgaggccc tgcccagctg aggcaaaaag tatgttggcc atagtaccga
1261 aggggaggaa ggccaaagcc ttatatgatt tccgagggga gaatgaagat gaactttcct
1321 tcaaggctgg agatataata acagagctgg aatctgtaga tgatgactgg atgagtggag
1381 aacttatggg aaaatctgga atatttccca aaaactacat acagtttcta cagatcagct
1441 agaggagaag cttgtctgtg ttccttggca caagaactca cttgaactat caccttgact
1501 atcagatatg tttttgcact atttttttta actgaaaaag aaatatctaa gctgtacatg
1561 gtacactaga attttctgaa agcagaaaac gttcagattt tgtagttaat tttcattaca
1621 atagaaacat gcacatggaa acccatgagc taggattcta ccgaggaaaa catctagtgg
1681 gattagcaag gtgaagggaa agcatctggt ggcatggcag catggggagg ctcacacaca
1741 gaagttgcac gtggacatct gttttaatca gcacaagtga attaaccatg cttcttcatt
1801 tttttacttt agttaaaaaa gaggacattt aatattctac atgctgtaac tatcaggaca
1861 tggttagcaa tctcaatttc atttttgata ttcaaattaa ttcttacagc ttgagcatat
1921 cagccttatt accagagcaa atccttcctt cagatgggat agtttactga ctagttggag
1981 catttgtaag cacatggtga aatcagcccc tgcccaccaa aataatcttt atgttaccaa
2041 gtgattccca tttgtctaag gatttgaagg gggtctaaat tggatgtatc ttagtctaaa
2101 gaaccaaaac catccctgaa atgccttgct aatacaacta atccttccat atatgtgcca
2161 tacttatttt tttcctcagt gtatacttta tgttaacagg gttattacaa agcacatttt
2221 ctgaatctgc aatcattcct ttgacaatta ctggacccaa aggaaaattc attttctttg
2281 cattattcca gtaatatata aaaactgtgt cttgttatag tagtacatta tgaatcacat
2341 ataaaatctt acaatacaga acaactgtta agatggaaaa cagtgccaaa cctccacagc
2401 tcatttcttt gtaatataat cagaatgaaa aataatttaa gaggacagaa gactggtact
2461 tttttgtttt attttttctc tagcttatcc ctgcacaatt attagagtga atgaaaaacc
2521 actttcctgc tttccattgt tataaattct aagcttaaga taaaagtggt tctttacatg
2581 actgaatcaa ttacaattta tgggctagag ccaaataggt tgaagacaat catccaaaca
2641 gatcaatgga atagaatttc attggaaatg taaaacactt tcccaacaat ggtcatgact
2701 ttcttctgtt tttgagaaga gtttcatatg ctggaccaca ttttagcttt tattgttttt
2761 tttttcccat tgtccaaaaa gttaagcaac aagtggccac acttttacgt gactacaacc
2821 tggagttctg caaagaaggt aatatttact tggtctttga ctaaagttat ctccccattc
2881 tatggttaca ttttattttg gactatgggg acttctaata cgttttggta aagaagagag
2941 tataaagaaa attcttgtca aatttcactc aaaagtaatt tcatgagaaa tcaatgattt
3001 aaagcattat ccaaattaaa ttatcatttg cagcaaactg tacaacagca ggaaggatat
3061 ggaatggaac atgaggtata tatctttgcc tttataattt taacatctta tattgaagat
3121 tctgaaaacc tatctttatt agaggaaaat ctcaatcttc agttttggcc ttctgtcacc
3181 agaatgataa gtgcaatagt tgtaaatcta cttgacactg taataaactg aactgaactt
3241 tcaaaaaaaa aaaaaaaaaa a
//