LOCUS BC084554 1927 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens mesoderm development candidate 1, mRNA (cDNA clone
MGC:99595 IMAGE:6088754), complete cds.
ACCESSION BC084554
VERSION BC084554.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1927)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1927)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-OCT-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: h Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 13446228.
FEATURES Location/Qualifiers
source 1..1927
/db_xref="H-InvDB:HIT000266063"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99595 IMAGE:6088754"
/tissue_type="Skin, melanoma, melanotic"
/clone_lib="NIH_MGC_112"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1927
/gene="MESDC1"
/db_xref="GeneID:59274"
/db_xref="HGNC:HGNC:13519"
CDS 178..1266
/gene="MESDC1"
/codon_start=1
/product="mesoderm development candidate 1"
/protein_id="AAH84554.1"
/db_xref="GeneID:59274"
/db_xref="HGNC:HGNC:13519"
/translation="MASGSAGKPTGEAASPAPASAIGGASSQPRKRLVSVCDHCKGKM
QLVADLLLLSSEARPVLFEGPASSGAGAESFEQCRDTIIARTKGLSILTHDVQSQLNM
GRFGEAGDSLVELGDLVVSLTECSAHAAYLAAVATPGAQPAQPGLVDRYRVTRCRHEV
EQGCAVLRATPLADMTPQLLLEVSQGLSRNLKFLTDACALASDKSRDRFSREQFKLGV
KCMSTSASALLACVREVKVAPSELARSRCALFSGPLVQAVSALVGFATEPQFLGRAAA
VSAEGKAVQTAILGGAMSVVSACVLLTQCLRDLAQHPDGGAKMSDHRERLRNSACAVS
EGCTLLSQALRERSSPRTLPPVNSNSVN"
BASE COUNT 348 a 580 c 595 g 404 t
ORIGIN
1 ctcccgccgc cgcagcccag tgccctctgc ccgcggcggt ggatggcatg atggtgcggg
61 gaaggcaccg cggccttggc cagctgagtc gcgacggccg ccggggcggc ggcagtggcc
121 gcggcagcgg cggtggtagc gggctcccca gcggcatgcc agtgcccccc gggcgcgatg
181 gctagcggca gcgccgggaa gcccactggc gaggcggctt ctccggctcc tgcgagcgcc
241 atcggcgggg ccagctcgca gccgcggaag aggctggtat ccgtctgcga ccactgcaag
301 ggcaagatgc agctggtggc tgacctgctg ctgctgtcga gcgaggcgcg gcccgtgctc
361 ttcgagggcc ccgcctcctc tggtgccggc gccgagtcct tcgagcagtg ccgggacacc
421 atcatcgcgc gcaccaaggg gctctccatc ctcacccacg acgtgcagag ccagctcaac
481 atgggccgct tcggggaggc gggggacagc ctggtggagc tgggcgacct ggtggtgtcg
541 ctgaccgagt gctcggccca cgcggcctat ctggccgctg tggccacgcc gggcgcccag
601 cccgcgcagc cgggcctggt ggaccgctac cgcgtgacgc gatgccgcca cgaggtggag
661 cagggttgcg ccgtgctgcg cgccacgccg ctggccgaca tgacgccgca gctgctgctg
721 gaggtgtcgc agggcctgtc gcgcaacctc aagttcctga cggacgcgtg cgccctggcc
781 agtgacaagt cacgggaccg cttttcgcgg gagcagttca agctgggcgt caagtgcatg
841 agcaccagcg cgtcggcgct gctggcctgc gtgcgcgagg tgaaggtggc gcccagtgag
901 ctggcgcgca gccgctgtgc gctcttcagc gggcccctgg tgcaggcagt gagcgccctg
961 gtaggcttcg ccaccgagcc gcagttcctg ggtcgcgcgg cagctgtgag cgccgagggc
1021 aaggcggtgc agaccgccat cctgggcggc gccatgagcg tggtgtcggc ctgcgtgctc
1081 ctgacccagt gcctcaggga tctggcgcag caccccgacg ggggcgccaa gatgtcggac
1141 cacagggaga ggctgaggaa ctcggcctgc gccgtgtctg aaggctgcac cctgctatct
1201 caggctttaa gggagaggtc ttcgcccagg actttaccgc cagtgaattc caattctgtg
1261 aattagcacc ccacccccat accccttctt ccacccccag actaaaggaa gatacttact
1321 ctctgcccct ctccatttat accaaagaaa tcataggtga aaccccctac cctccccaac
1381 gttaaatgct cgagaggaat cttccacaag gcagggccat gcacgcaacc tgcacacgca
1441 cttggagggc ccaggtgtct ctccaccagc ccccatgcag tagggactgg aagatatgtc
1501 atctgctggt tgtgttatca ctcccacccc ctaccccagc ccgtcttccg gaatttctca
1561 actaaatttc attattgggc aggaaggagg tcatgggttc atttcatttt tgttttttgt
1621 gtttttaatt aaaagaaagg ttacctcagt tttcactcct tagacatgga tgtagctacc
1681 tttttttgta tgtctttttt ttttttaagc aatcgtgttg aattaggagt atacttggtg
1741 tggaaagagt atgaatttgc catgtgattt gcaaatgggg ggaagctact gtgagcgtgt
1801 gtttttttaa tttacactat agagtgattt ttttttcccc caacgtcaag tttttacctt
1861 gcatgtactg gagtatttat ttcatctatt aaaatgttat gtttctcaga aaaaaaaaaa
1921 aaaaaaa
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