LOCUS BC080515 1860 bp mRNA linear HUM 30-JAN-2008
DEFINITION Homo sapiens eukaryotic translation initiation factor 3, subunit D,
mRNA (cDNA clone MGC:99492 IMAGE:2822489), complete cds.
ACCESSION BC080515
VERSION BC080515.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1860)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1860)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 59 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 23238220.
FEATURES Location/Qualifiers
source 1..1860
/db_xref="H-InvDB:HIT000265787"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:99492 IMAGE:2822489"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1860
/gene="EIF3D"
/gene_synonym="eIF3-p66"
/gene_synonym="eIF3-zeta"
/db_xref="GeneID:8664"
/db_xref="HGNC:HGNC:3278"
/db_xref="MIM:603915"
CDS 72..1718
/gene="EIF3D"
/gene_synonym="eIF3-p66"
/gene_synonym="eIF3-zeta"
/codon_start=1
/product="eukaryotic translation initiation factor 3,
subunit D"
/protein_id="AAH80515.1"
/db_xref="GeneID:8664"
/db_xref="HGNC:HGNC:3278"
/db_xref="MIM:603915"
/translation="MAKFMTPVIQDNPSGWGPCAVPEQFRDMPYQPFSKGDRLGKVAD
WTGATYQDKRYTNKYSSQFGGGSQYAYFHEEDESSFQLVDTARTQKTAYQRNRMRFAQ
RNLRRDKDRRNMLQFNLQILPKSAKQKERERIRLQKKFQKQFGVRQKWDQKSQKPRDS
SVEVRSDWEVKEEMDFPQLMKMRYLEVSEPQDIECCGALEYYDKAFDRITTRSEKPLR
SIKRIFHTVTTTDDPVIRKLAKTQGNVFATDAILATLMSCTRSVYSWDIVVQRVGSKL
FFDKRDNSDFDLLTVSETANEPPQDEGNSFNSPRNLAMEATYINHNFSQQCLRMGKER
YNFPNPNPFVEDDMDKNEIASVAYRYRRWKLGDDIDLIVRCEHDGVMTGANGEVSFIN
IKTLNEWDSRHCNGVDWRQKLDSQRGAVIATELKNNSYKLARWTCCALLAGSEYLKLG
YVSRYHVKDSSRHVILGTQQFKPNEFASQINLSVENAWGILRCVIDICMKLEEGKYLI
LKDPNKQVIRVYSLPDGTFSSDEDEEEEEEEEEEEEEEET"
BASE COUNT 523 a 448 c 492 g 397 t
ORIGIN
1 gctaacgcgg tccccggcac gcaccatctg ttgccatccc ggccggccga ggccattgca
61 gattttggaa gatggcaaag ttcatgacac ccgtgatcca ggacaacccc tcaggctggg
121 gtccctgtgc ggttcccgag cagtttcggg atatgcccta ccagccgttc agcaaaggag
181 atcggctagg aaaggttgca gactggacag gagccacata ccaagataag aggtacacaa
241 ataagtactc ctctcagttt ggtggtggaa gtcaatatgc ttatttccat gaggaggatg
301 aaagtagctt ccagctggtg gatacagcgc gcacacagaa gacggcctac cagcggaatc
361 gaatgagatt tgcccagagg aacctccgca gagacaaaga tcgtcggaac atgttgcagt
421 tcaacctgca gatcctgcct aagagtgcca aacagaaaga gagagaacgc attcgactgc
481 agaaaaagtt ccagaaacaa tttggggtta ggcagaaatg ggatcagaaa tcacagaaac
541 cccgagactc ttcagttgaa gttcgtagtg attgggaagt gaaagaggaa atggattttc
601 ctcagttgat gaagatgcgc tacttggaag tatcagagcc acaggacatt gagtgttgtg
661 gggccctaga atactacgac aaagcctttg accgcatcac cacgaggagt gagaagccac
721 tgcggagcat caagcgcatc ttccacactg tcaccaccac agacgaccct gtcatccgca
781 agctggcaaa aactcagggg aatgtgtttg ccactgatgc catcctggcc acgctgatga
841 gctgtacccg ctcagtgtat tcctgggata ttgtcgtcca gagagttggg tccaaactct
901 tctttgacaa gagagacaac tctgactttg acctcctgac agtgagtgag actgccaatg
961 agccccctca agatgaaggt aattccttca attcaccccg caacctggcc atggaggcaa
1021 cctacatcaa ccacaatttc tcccagcagt gcttgagaat ggggaaggaa agatacaact
1081 tccccaaccc aaacccgttt gtggaggacg acatggataa gaatgaaatc gcctctgttg
1141 cgtaccgtta ccgcaggtgg aagcttggag atgatattga ccttattgtc cgttgtgagc
1201 acgatggcgt catgactgga gccaacgggg aagtgtcctt catcaacatc aagacactca
1261 atgagtggga ttccaggcac tgtaatggcg ttgactggcg tcagaagctg gactctcagc
1321 gaggggctgt cattgccacg gagctgaaga acaacagcta caagttggcc cggtggacct
1381 gctgtgcttt gctggctgga tctgagtacc tcaagcttgg ttatgtgtct cggtaccacg
1441 tgaaagactc ctcacgccac gtcatcctag gcacccagca gttcaagcct aatgagtttg
1501 ccagccagat caacctgagc gtggagaatg cctggggcat tttacgctgc gtcattgaca
1561 tctgcatgaa gctggaggag ggcaaatacc tcatcctcaa ggaccccaac aagcaggtca
1621 tccgtgtcta cagcctccct gatggcacct tcagctctga tgaagatgag gaggaagagg
1681 aggaggaaga agaggaagaa gaagaggaag aaacttaaac cagtgatgtg gagctggagt
1741 ttgtccttcc accgagacta cgagggcctt tgatgcttag tggaatgtgt gtctaacttg
1801 ctctctgaca tttagcagat gaaataaaat atatatctgt ttaaaaaaaa aaaaaaaaaa
//