LOCUS BC078655 3872 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens Src homology 3 domain-containing guanine nucleotide exchange factor, mRNA (cDNA clone MGC:87070 IMAGE:4374088), complete cds. ACCESSION BC078655 VERSION BC078655.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3872) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3872) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-AUG-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 167 Row: a Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 21361486. FEATURES Location/Qualifiers source 1..3872 /db_xref="H-InvDB:HIT000265742" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87070 IMAGE:4374088" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3872 /gene="SGEF" /gene_synonym="CSGEF" /gene_synonym="DKFZP434D146" /gene_synonym="HMFN1864" /db_xref="GeneID:26084" CDS 153..2768 /gene="SGEF" /gene_synonym="CSGEF" /gene_synonym="DKFZP434D146" /gene_synonym="HMFN1864" /codon_start=1 /product="Src homology 3 domain-containing guanine nucleotide exchange factor" /protein_id="AAH78655.1" /db_xref="GeneID:26084" /translation="MDGESEVDFSSNSITPLWRRRSIPQPHQLLGRSKPRPQSYQSPN GLLITDFPVEDGGTLSAAQIPAQVPTASDSRTVHRSPLLLGAQRRAVANGGTASPEYR AASPRLRRPKSPKLPKAVPGGSPKSPANGAVTLPAPPPPPVLRPPRTPNAPAPCTPEE DLTGLTASPVPSPTANGLAANNDSPGSGSQSGRKAKDPERGLFPGPQKSSSEQKLPLQ RLPSQENELLENPSVVLSTNSPAALKVGKQQIIPKSLASEIKISKSNNQNVEPHKRLL KVRSMVEGLGGPLGHAGEESEVDNDVDSPGSLRRGLRSTSYRRAVVSGFDFDSPTSSK KKNRMSQPVLKVVMEDKEKFSSLGRIKKKMLKGQGTFDGEENAVLYQNYKEKALDIDS DEESEPKEQKSDEKIVIHHKPLRSTWSQLSAVKRKGLSQTVSQEERKRQEAIFEVISS EHSYLLSLEILIRMFKNSKELSDTMTKTERHHLFSNITDVCEASKKFFIELEARHQNN IFIDDISDIVEKHTASTFDPYVKYCTNEVYQQRTLQKLLATNPSFKEVLSRIESHEDC RNLPMISFLILPMQRVTRLPLLMDTICQKTPKDSPKYEVCKRALKEVSKLVRLCNEGA RKMERTEMMYTINSQLEFKIKPFPLVSSSRWLVKRGELTAYVEDTVLFSRRTSKQQVY FFLFNDVLIITKKKSEESYNVNDYTLRDQLLVESCDNEELNSSPGKNSSTMLYSRQSS ASHLFTLTVLSNHANEKVEMLLGAETQSERARWITALGHSSGKPPADRTSLTQVEIVR SFTAKQPDELSLQVADVVLIYQRVSDGWYEGERLRDGERGWFPMECAKEITCQATIDK NVERMGRLLGLETNV" BASE COUNT 1060 a 952 c 929 g 931 t ORIGIN 1 ggcgctctcc taagctctcg cggctgcgct tcggtcccgg acccgggcca cccacggggt 61 agtgggtgct cctcggcccc ggacattgca agccccagaa ggcaagacta actcggtgtt 121 gctcctcccg gcgctgactt cgaggcccgg ctatggacgg cgagagcgag gtggattttt 181 ctagcaacag cataacccct ttgtggcgga ggcggtcgat tcctcagccc caccagcttc 241 tgggccggag caagccgagg ccccagtcct accagagccc caacgggtta ctaattacgg 301 atttcccggt ggaggacgga gggacgctct ccgcagcgca gattcccgcc caggtgccca 361 ccgcctcgga cagcaggacg gtacatagga gccccctgct tctgggcgcc cagcggagag 421 cggtggccaa tggtgggacg gcatccccgg agtacagggc tgcctctcct cgacttcgac 481 ggcccaagtc acccaagctc cccaaagcgg tgcctggcgg ctccccgaaa tccccagcaa 541 atggcgcggt gaccttgcct gcgccgccgc cgccgccggt tctgcgcccc ccgcggactc 601 ctaacgcgcc cgccccctgc acccccgagg aggaccttac tgggttgact gccagcccgg 661 tgccttcgcc cactgcaaat ggccttgccg ctaataacga ctctcctggg tcaggttcgc 721 agtccggccg gaaggcaaag gaccccgaac gggggctctt tcctgggccc cagaaaagtt 781 cttcggaaca aaaactcccc ctccaaaggc tgccctccca ggagaacgag ctcctcgaga 841 atccttccgt ggttttgagt acaaacagcc ccgccgccct caaagtgggg aagcagcaga 901 tcattccgaa gagtctggcc tcggaaatta aaataagtaa atccaacaat caaaatgtgg 961 agccccacaa gagactcctc aaggtgcgca gcatggtgga gggcctagga ggacccctgg 1021 gtcacgcagg ggaggagagt gaggtcgata acgacgtgga tagcccaggg tctctgcgga 1081 gaggcttgcg gtccacgtct tatcgcaggg cagtggtcag tggctttgat tttgacagtc 1141 ctaccagctc gaagaagaag aacagaatgt cccagcctgt tctgaaagtg gtgatggaag 1201 acaaggagaa gttttccagt ctgggaagga taaagaaaaa aatgctgaaa ggacaaggaa 1261 catttgatgg ggaagaaaat gctgtcctgt atcaaaacta caaggaaaag gcccttgaca 1321 ttgattctga tgaagagtca gagcccaaag aacagaagtc agatgaaaaa attgtgattc 1381 accataagcc attgagatcc acatggagcc aactctctgc ggtgaaaaga aagggattat 1441 ctcagacagt aagccaggag gaaagaaaga gacaagaggc tatctttgaa gtcatatcct 1501 ctgaacattc atatttactc agcttggaga tcttgatacg aatgtttaaa aattctaaag 1561 aactgagtga tacaatgact aaaaccgaga ggcaccatct tttctccaat attacagatg 1621 tctgtgaggc aagcaaaaag ttctttatag agttggaagc aagacatcag aataatatct 1681 tcatagatga cataagtgac attgtggaaa aacacacagc atccacattt gacccatatg 1741 tgaaatactg cacaaatgaa gtctaccaac aacgaacact acaaaaattg ttagctacca 1801 atccatcctt taaggaagta ttgtcaagga ttgagtccca tgaagactgt aggaacttac 1861 ccatgatctc ttttctcatt ctccccatgc agagggtgac ccgccttccc ctgctgatgg 1921 atactatctg tcaaaaaaca cctaaggact ctccgaagta tgaagtctgc aaaagagcct 1981 tgaaggaagt tagcaagttg gttcgactat gcaatgaggg cgcccggaag atggaaagga 2041 ctgagatgat gtacacaatt aactcccagc tggaatttaa aattaagcct tttcctttag 2101 tctcctcttc ccggtggttg gtaaaaagag gtgaattgac agcctatgtt gaagacactg 2161 tgcttttctc aagaaggaca tccaaacagc aagtctactt ctttctcttt aacgatgtgc 2221 tcattatcac caagaagaag agtgaagaaa gttacaacgt caatgattat accttaagag 2281 atcagctatt ggtggaatct tgtgacaatg aagagcttaa ttcttctcca gggaagaaca 2341 gctccacaat gctctattca agacagagct ctgccagtca cctctttact ctgacagtcc 2401 ttagtaacca cgcgaatgag aaagtggaga tgctactagg agctgagacg cagagcgagc 2461 gagcccgctg gataactgcc ctgggacaca gcagcgggaa gccgcctgca gaccgaacct 2521 cactgaccca ggtggaaatc gttaggtcat ttactgctaa gcagccagat gaactctccc 2581 tgcaggtggc tgacgtcgtc ctcatctatc aacgtgtcag cgatggctgg tatgaggggg 2641 aacgactacg agatggagaa agaggctggt ttcctatgga atgtgccaag gagataacat 2701 gtcaagctac aattgataag aatgtggaga gaatgggacg cttgctagga ctggagacca 2761 acgtgtagtc tctcagatgg tcttttgtta ctgcaagatt tgcacgacac ttaccgggct 2821 ggttggttct gggctagttt tattgttaat tttgtcacag cctatttaat taaaagaacg 2881 aaaacacttg cctttaagct tgccaggttg ttctgctctc tcatgagaag agcttggata 2941 cagtgagttt gcacagctca gtttttacct aaccacacac ttgcagacct cctgaggtac 3001 acagaatagc tgagcagttc acttcaggga tcaggtcatc tctgctcctc ctagtttcac 3061 catgttctgg caataaaaaa cacatattat atcctggttt tctctatcct tgcattacta 3121 aggtgactgt ctctctttat acatccttgt atggttctcc cagtattagc aagattgtat 3181 atctgtaaag aatgtccagt tttgtaaata tttccctgcc tttttttttc tttttttaca 3241 tctgatttta atgcttcgtt aacttcaaaa ggaactggta gagttcagaa ggtgagctgt 3301 tgtttttcta aacctcttcc caggaagggg acattgacac ttgaattttt gtcacctttt 3361 tcctcattag aaggaaagta gaaagcctta ctgtaggatt tttaaaaaaa aatccatctc 3421 accccatatt ggtcttaaat aagtatagac taattaacct aagctacctt taacaacgta 3481 gaatttagat gggttcatat atgtgagaaa aacctgaata taggacaggg gtcctacttt 3541 tttccccacc tctgtcgccc aggctagagt atagtggtgt gatcttggcc cactgcaacc 3601 tctgcttcct aggttcaagt gattctcctg cctcagcctc ccaagtagct gggattgtaa 3661 gagtatgcca ccacgcccag ctactttttg tatttttagt agagacaggg tttcatcatg 3721 ttggccagga tggtctctta actcctgccc tcaagtgatc caccagagag gagatcctcg 3781 gcctccccaa gtgctgggat tataggcatg agccaccgtg cccagcctac tttctaatta 3841 attaaaaaaa aaaaaagaaa aaaaaaaaaa aa //