LOCUS BC078169 2700 bp mRNA linear HUM 13-JUN-2005
DEFINITION Homo sapiens hypothetical LOC554248, mRNA (cDNA clone MGC:87732
IMAGE:5768316), complete cds.
ACCESSION BC078169
VERSION BC078169.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2700)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2700)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: d Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 26051277.
FEATURES Location/Qualifiers
source 1..2700
/db_xref="H-InvDB:HIT000265728"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87732 IMAGE:5768316"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2700
/gene="LOC554248"
/db_xref="GeneID:554248"
CDS 217..399
/gene="LOC554248"
/codon_start=1
/product="LOC554248 protein"
/protein_id="AAH78169.1"
/db_xref="GeneID:554248"
/translation="MAEAKGRRDLGLARVCPQRPGAGRRCTVSPREADLGPEKDTHLD
LPHRPGPGPSGAEQPW"
BASE COUNT 642 a 731 c 822 g 505 t
ORIGIN
1 ggtcatcgct tgctctggtt cccaggcttt ggcctctagt ggacgagaat caccgagtct
61 gcggggctag acgctgaccg cccgggccag cacctaggcg ggcgggagct gtgcggccca
121 gggttcgcgc gggccgggta gaggctcgag ccaggacccc cgagcgtgaa ccccggagcc
181 ggcggcgctg gggccagagg ggccgggcgg gaggtgatgg cggaggcgaa ggggcgacgg
241 gacctgggcc tggcccgtgt gtgtcctcag aggcctggcg ccggccgtcg ctgtacggtg
301 agccccaggg aggcggatct gggccccgag aaggacaccc acctggattt gccccatagg
361 cccggcccgg gcccctcggg agcagaacag ccttggtgag gtggacagga ggggacctcg
421 tgagcagacg cgtgcgccag cgacagcagc ccgccccggc ctctcaggag ccgtggggca
481 gaggctgcgg agccccagga gggccggagc cctcatgact tcagtgacct gcttctgccc
541 ctctaggtct atcagccaca gtctctgcaa gtttccaaga gcagcagaaa atgaacacat
601 tgcagtcatg ttgtcatagg aacaactgga gaagaataaa gtggacacga aaagggagag
661 tattcttcca acgataatac tcacatcgca gaacgcgaaa atcttctgtc aggaggggcg
721 atcctcagag tcactgggct acacaccatc ctggagttgc gaggggacag cacagccttc
781 ttgtgataac cattccagca cactgtggga agtacccccg gacaggaata ctgggcctga
841 tggatcggat agcgtcttcg aggtgttatt acaaaccgat ctggtaaagt cccacgatcc
901 ctgcagagaa tgcgagacaa atcatggaaa caaagtataa aagaatgtca aaattttaga
961 cggttaaaaa cccaccagtt aagacatttt ccaaagaact taagtctctt tctacgcaac
1021 acagaacacg ttgtttttat ggcaactttc ccctattcca tctaagagca gagagtgaca
1081 gctgcttaac agctgtctca acaatggatt gcaacaattt gagagggaaa atctaaatct
1141 agactaaatc tagactgcac taaaattcgg ggagttttta gaactggaaa gaagggaatc
1201 gttttggcaa cacatctcac accaagcaag agtcagaggc caggagacgg ctggcacaca
1261 ccaaggtgtt aaggagggca aaaccacaca caattccctt cggatttgat gaaaaagcaa
1321 atcggattta aaagtcctcg atttcaagcc agccgagcca aaggatgatc tgggaaaatc
1381 agcgcatctc accgtgggga aggcctcccg gagggtcgga gaagaggagt ggggagagag
1441 gggtaaaagt ggtgaacgcg atgggtcggc ggggagggcg gtgtggagcg cggcgccggg
1501 cgggcgggcg ggtgggcggc ggccaggcct attccgcagg tcctggccct ccggagcggg
1561 ggcgggctgc ggcggcccgg gcttgcccag gtaactgccc atgaggagca gttcggcagg
1621 gtcaggtcct tcgagcaggg tccgcggctc taggaggttt ccgttggctg tcgacttggc
1681 cggaggcgaa gcgaacagtg ttcgccgatg tcgcgccttc tgaacgaagg aggacaaggg
1741 gcgcgaacct cggggctcgc ggctcagtcc ccaccaggcc gcggtagtcc ccacggccag
1801 ccaggccagc gcagccgcag caggcacgag gtacagtagg aggccgacca gcgacaggcc
1861 gagaagcgcc gccccggccg gccctgacac tcgctatcgg ccgccgccgc tcgcctgctc
1921 cagccgtcgc agccgccgga gacatcgcgg ctccgcgccg cggaggagac ttaaatatcc
1981 cagcgtgcac cgcgccacgc gtcgcgtcac gcgcgcccgc cacgtcatgc gcgcgcgact
2041 cggggagaag ctacagcccg gcagctcccg agacacagct gttttggaaa atgccgcctg
2101 ccttcaacgc ctgtttctga ctcttgcggt ttcccgcatg gctcccagcg agacgatccc
2161 gtccgggatc ccatccggct cccatccgga ggcgatcccg tgaaaggatc gcgtccaaaa
2221 taaaagggcc cgagacctat gcttatgtaa ttcctaatcc gtgatctttt ctaggggctg
2281 aactcccctc cagcacagcc tgttaccagg tgcttttcac aaacgccact ggcggctgag
2341 ttttcccccc cacttccatt tctactttac aagttgataa cgtgggacga ttacctacca
2401 aatttcacat catggcccag atatcgggtg gattttgagg ctctgtgatc gatttatacc
2461 tatgctaaag ttatcggtct gagaaagtag attagtggtt gcctagggct aaggagtggg
2521 tttgggggtg gggaatagaa aatgactgct tatgggtata ggctttctcg tagcagcata
2581 aacatagttt aaaattagat cgtgttggcg gttgcaccac cctatgaact gtatggtttg
2641 tgaattatac cttaataaag ctgtttaaaa agtcaaaaaa aaaaaaaaaa aaaaaaaaaa
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