LOCUS BC076382 2006 bp mRNA linear ROD 15-JUL-2006
DEFINITION Rattus norvegicus interferon regulatory factor 1, mRNA (cDNA clone
MGC:93592 IMAGE:7099391), complete cds.
ACCESSION BC076382
VERSION BC076382.1
KEYWORDS MGC.
SOURCE Rattus norvegicus (Norway rat)
ORGANISM Rattus norvegicus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Rattus.
REFERENCE 1 (bases 1 to 2006)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2006)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Howard Jacobs
cDNA Library Preparation: Express Genomics
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 181 Row: c Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6981103.
FEATURES Location/Qualifiers
source 1..2006
/organism="Rattus norvegicus"
/mol_type="mRNA"
/db_xref="taxon:10116"
/clone="MGC:93592 IMAGE:7099391"
/tissue_type="Lung, rat (Brown Norway)"
/clone_lib="NIH_MGC_231"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..2006
/gene="Irf1"
/db_xref="GeneID:24508"
/db_xref="RATMAP:34117"
/db_xref="RGD:2920"
CDS 111..1097
/gene="Irf1"
/codon_start=1
/product="interferon regulatory factor 1"
/protein_id="AAH76382.1"
/db_xref="GeneID:24508"
/db_xref="RATMAP:34117"
/db_xref="RGD:2920"
/translation="MPITRMRMRPWLEMQINSNQIPGLSWINKEEMIFQIPWKHAAKH
GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKG
SSAVRVYRMLPPLTKNQRKERKSKSSRDTKSKTKRKLCGDSSPDTLSDGLSSSTLPDD
HSSYTAQGYLGQDLDMDRDITPALSPCVVSSSLSEWHMQMDIMPDSTTDLYNLQVSPM
PSTSEAATDEDEEGKLPEDIMKLFEQSEWQPTHVDGKGYLLNEPGAQLSTVYGDFSCK
EEPEIDSPGGDIEIGIQRVFTEMKNMDPVMWMDTLLGNSTRPPSIQAIPCAP"
BASE COUNT 536 a 523 c 509 g 438 t
ORIGIN
1 cccagcatct cgggcatcat tcgctccgtg cacgcatcgt gtacctacac cgcaactccg
61 tgcctcattc ccgggtaccc tctgtgactc gctcctgcag caaagccacc atgcctatca
121 ctcggatgcg aatgagaccc tggctagaga tgcagattaa ttccaaccaa attccagggc
181 tgagctggat caataaagaa gagatgatct tccagatccc atggaagcat gctgccaagc
241 acggttggga catcaacaag gatgcctgtc tgttccggag ctgggccatt cacacaggcc
301 gatacaaagc aggggaaaaa gagccagatc ccaagacttg gaaggcaaac ttccggtgtg
361 ccatgaactc cctaccagac atcgaggaag tgaaggacca gagcaggaac aagggcagct
421 ctgctgtacg cgtgtaccgg atgctgccac ccctcaccaa gaaccagagg aaagagagaa
481 agtccaagtc cagccgtgac actaagagca aaaccaagag gaagctgtgc ggagattcta
541 gccctgacac cttatctgac ggactgagca gctctactct gcctgatgac cacagcagtt
601 acacagctca gggatacctg ggtcaggact tggacatgga cagggacatt accccagctc
661 tgtcaccgtg cgtcgtcagc agcagtctct ctgagtggca tatgcagatg gacatcatgc
721 cagacagcac cactgatctg tacaacttgc aggtgtcgcc catgccctcc acctctgaag
781 ctgcaacaga tgaggatgag gaagggaagt tacctgagga catcatgaag ctctttgaac
841 agtctgagtg gcagccgacg cacgtggatg gcaagggata cttgctcaat gaaccaggag
901 cccaactctc tactgtctat ggagacttca gctgcaagga ggaaccagag atcgacagcc
961 ctggagggga catcgagata ggcatacagc gtgtcttcac agagatgaag aatatggacc
1021 ccgtcatgtg gatggacacc ctgctgggca actctaccag gccgccctcc attcaggcta
1081 ttccttgtgc accataattt gggtccctga cccgttcttg ccctcctgag tgagctaggt
1141 ccagcatcat ggtggctgtg atacaacata aagctaaact tccgtggacc ccttgatgtg
1201 gcaaaacata atcccattgc caagcaggga agggaccaaa ccatcctcct tgggtcagtg
1261 gactgactct tcagagctta ggaggcaggg tctaagtttt tcaagctggt cctgactcct
1321 aggaagatgg attggcgttc tgaggttagt gtgaggcaga ggacctggac ggaagttacc
1381 ttctagctct ttgaaagctt cattgcttag agagggtctc accactgggc tggccctggg
1441 ggaatagacc agcgcccaca gaagagcatt gcactggcct tagggctggc tccacactgg
1501 gagacaattg cactaagtcc tattcccaaa gaactgctgc ccttcccaac cgagccctgg
1561 gatggttcta gagccagtga aatgtgaagg aaaaaatggg gtcctgtgag ggttgtctcc
1621 cttagcctca gagggattct gcctcactcc ctgctccagc tgtggggctc aggaaaaaaa
1681 aatggcactt tctctgtgga ctttgccaca tttctgatca gaagtgtaca ctaacatttc
1741 tccccaagtc ttggcctttg catttattta tatagtgcct tgccctgtgc ctgctgtctc
1801 tcctcaggcc tcagcagtcc tcagcaggcc cagggagggg gttgtgagcg ccttggcgtg
1861 actctgaaca ttggaaacgc cacctaacta ctaagttgtg tctgatctcg tgtggatctg
1921 tgtaaatatg tatattcatc tttttataaa aacctaagtt gtttaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa aaaaaaaaaa aaaaaa
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