LOCUS BC075897 1678 bp mRNA linear VRT 18-MAR-2009
DEFINITION Danio rerio tripartite motif-containing 55a, mRNA (cDNA clone
MGC:92123 IMAGE:7048622), complete cds.
ACCESSION BC075897
VERSION BC075897.1
KEYWORDS MGC.
SOURCE Danio rerio (zebrafish)
ORGANISM Danio rerio
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE 1 (bases 1 to 1678)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1678)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (06-JUL-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Len Zon, Harvard
cDNA Library Preparation: Open Biosystems
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 179 Row: e Column: 21
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 49902714.
FEATURES Location/Qualifiers
source 1..1678
/organism="Danio rerio"
/mol_type="mRNA"
/db_xref="taxon:7955"
/clone="MGC:92123 IMAGE:7048622"
/tissue_type="Whole, adult zebrafish"
/clone_lib="NIH_ZGC_10"
/lab_host="DH10B"
/note="Vector: pExpress1"
gene 1..1678
/gene="trim55a"
/gene_synonym="trim55"
/gene_synonym="wu:fb71c01"
/gene_synonym="zgc:92123"
/db_xref="GeneID:436631"
/db_xref="ZFIN:ZDB-GENE-040718-50"
CDS 131..1462
/gene="trim55a"
/gene_synonym="trim55"
/gene_synonym="wu:fb71c01"
/gene_synonym="zgc:92123"
/codon_start=1
/product="tripartite motif-containing 55a"
/protein_id="AAH75897.1"
/db_xref="GeneID:436631"
/db_xref="ZFIN:ZDB-GENE-040718-50"
/translation="MSVTLDYCLSRSRDTMESLERQLICPICLEIFTKPVVILPCQHN
LCRKCANDIFQASNPYLPTRGGSSLGSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVEN
IIDMYKQESSSSKPEPQVKEEVLMCEEHQDERINIYCVTCSVPTCSLCKVFGSHQTCE
VAPLKSVYESQKTELSDGVGLLVGNNDRIQGIISQLEETCRSVEENGRRQKSRVCEWF
DRLYALLEERRGDLTLKITAEQQEKLDYISGLQRKYREHLDNSAKLVETGIQTMEESE
MAIFLQNTKPLLQQIAESRNVSHLEKVERGYENMDHFSANFQSERRAILSIDFIKDGD
DNDEDEDDDEEITVNPEASSGAAPAPVQQRQTPVPNPSPMAADSVQMSLKPSQSANTN
PTENTPIVTPTPDSTHIPSADAQAQVTSGPGQTSDDGQRHVFSFSWLNMPK"
BASE COUNT 532 a 394 c 387 g 365 t
ORIGIN
1 gacgcgtttt accgttcatg ttgtataagt tccacagcac gggaaacagc atttctttaa
61 taagagaata aaaacaatca agacccaaca cacgcaaaag tgtgttcagc aaacgcgcgc
121 gccccgggtg atgagcgtga ctttggatta ctgcctcagt agatcgcgcg acaccatgga
181 aagtttggag aggcagctca tttgccccat ttgccttgag atcttcacca aaccggtggt
241 cattttaccg tgccagcaca acctctgccg caaatgtgcc aacgacatct ttcaggcctc
301 aaacccctac ctacccacac ggggaggctc ttcactgggc tccggcggcc ggttccgctg
361 tccctcctgc agacatgaag tagttctgga caggcacggg gtctatggcc tgcagaggaa
421 cctgctggtg gagaatatca tagacatgta caaacaggag tccagcagca gtaaacctga
481 gccacaagtg aaggaagagg tgctgatgtg cgaagagcat caggacgaga ggattaatat
541 ctactgcgtg acgtgctctg ttcctacttg ttcgctatgc aaagtgttcg ggagtcatca
601 gacctgtgag gtcgctccac ttaaatctgt ctatgagtcc cagaaaacag agctgtccga
661 tggcgttggc ctgttagttg gaaacaatga cagaattcag ggaattatca gtcagctaga
721 ggaaacctgc agatctgtgg aggagaacgg tcgcaggcag aagtctcgtg tttgcgagtg
781 gtttgatcgc ctgtatgctc ttctggaaga acgcagagga gatctaacgc tgaagatcac
841 agcagaacag caggagaagc tggattatat cagtggccta cagcgcaagt acagagagca
901 tctggataac tcagctaaac tagtggagac aggaattcag acaatggagg aatctgaaat
961 ggctatcttc ctgcagaaca cgaagcctct gctacaacag attgcagaaa gccggaatgt
1021 gtctcactta gagaaggttg agcgtggata tgaaaacatg gatcatttct ctgcaaactt
1081 ccagtcggag cgaagagcaa tcctcagtat agactttatc aaggatgggg acgacaatga
1141 tgaggatgag gatgatgatg aagaaataac cgtaaatcct gaggcatctt caggagccgc
1201 acctgcccca gttcagcaga gacaaacccc cgtgccaaat ccttcaccaa tggcagctga
1261 ctctgtccaa atgtcattaa agcccagcca atcagcaaac acaaatccga cagagaacac
1321 gcccatagtt acacccactc cagactccac tcacatccct tccgcagatg cacaagcaca
1381 ggtaacatcc ggtcccggcc agacatctga tgatggacaa cgccacgttt tctctttctc
1441 ttggttaaat atgccaaagt aacccaagac taaacctgat aaacctgcaa cactacagtt
1501 aaccttccag aaaagcctga tgtacatcaa aatgaatatt gtatttcttt tccaacaata
1561 attatacatt aaatagctag ataagaataa aaaaaaacat ttctttctga agtagaggac
1621 taaagtgcaa aataaatgat gaataagtga aaaaaaaaaa aaaaaaaaaa aaaaaaaa
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