LOCUS BC075065 1805 bp mRNA linear HUM 08-MAR-2005
DEFINITION Homo sapiens synapsin III, transcript variant IIIa, mRNA (cDNA
clone MGC:104132 IMAGE:30915588), complete cds.
ACCESSION BC075065
VERSION BC075065.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1805)
AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1805)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC075065.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 5 Row: D Column: 1.
FEATURES Location/Qualifiers
source 1..1805
/db_xref="H-InvDB:HIT000265572"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104132 IMAGE:30915588"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_264"
/lab_host="DH10B"
/note="Vector: pCR4 Topo TA"
gene 1..1805
/gene="SYN3"
/db_xref="GeneID:8224"
/db_xref="MIM:602705"
CDS 27..1769
/gene="SYN3"
/codon_start=1
/product="synapsin III, isoform IIIa"
/protein_id="AAH75065.1"
/db_xref="GeneID:8224"
/db_xref="MIM:602705"
/translation="MNFLRRRLSDSSFMANLPNGYMTDLQRPDSSTSSPASPAMERRH
PQPLAASFSSPGSSLFSSLSSAMKQAPQATSGLMEPPGPSTPIVQRPRILLVIDDAHT
DWSKYFHGKKVNGEIEIRVEQAEFSELNLAAYVTGGCMVDMQVVRNGTKVVSRSFKPD
FILVRQHAYSMALGEDYRSLVIGLQYGGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSL
GPEKFPLVEQTFFPNHKPMVTAPHFPVVVKLGHAHAGMGKIKVENQLDFQDITSVVAM
AKTYATTEAFIDSKYDIRIQKIGSNYKAYMRTSISGNWKANTGSAMLEQVAMTERYRL
WVDSCSEMFGGLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSK
MSQLPMPGGTAPSPLRPWAPQIKSAKSPGQAQLGPQLGQPQPRPPPQGGPRQAQSPQP
QRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSPGSPQLSRASSGSSPNQASKPGATLAS
QPRPPVQGRSTSQQGEESKKPAPPHPHLNKSQSLTNSLSTSDTSQRGTPSEDEAKAET
IRNLRKSFASLFSD"
BASE COUNT 422 a 596 c 455 g 332 t
ORIGIN
1 ccagtcatct ccatccatcc acagccatga atttcctccg gcgacgtctc tctgacagca
61 gcttcatggc caacctgcct aatggctata tgacggacct gcaacgccca gatagctcca
121 ccagctcacc tgcttccccc gccatggaga ggaggcaccc ccagcccctg gctgcctcct
181 tctcctctcc aggatccagc ctttttagct ccctctccag tgccatgaag caggcccctc
241 aggccacctc aggactgatg gagcctccag gtccctccac gcccattgtt caaagaccca
301 ggatcctgtt ggtgatcgat gatgcccata cagactggtc gaagtatttc catgggaaga
361 aggtgaatgg agagattgag atccgagtgg agcaggctga attctcagag ttgaacctag
421 ctgcctatgt gaccgggggc tgcatggtgg acatgcaggt cgtgagaaat gggaccaaag
481 tggtgagcag atccttcaag ccagacttca tcctggtccg ccagcatgcc tacagcatgg
541 ccctggggga agactaccgc agcctggtca tcggcctgca gtatggaggg ctgcctgctg
601 tcaactctct ctactccgtc tacaacttct gcagcaagcc ctgggtgttc tctcagctca
661 ttaagatctt ccattccctg ggtcctgaga agttcccgct tgtggagcaa acatttttcc
721 ccaaccataa gccaatggtc acagccccac acttcccggt ggtagtcaag ctgggacatg
781 cccacgctgg aatgggaaag atcaaagtgg aaaaccagct tgacttccag gacatcacca
841 gcgtggtcgc catggccaaa acctacgcca ccaccgaggc cttcatcgac tccaagtacg
901 acatccgcat ccagaaaatt ggatccaact acaaggctta catgagaacc tccatctctg
961 ggaactggaa ggccaacaca ggctctgcca tgctggagca ggtggccatg acagagaggt
1021 acaggctgtg ggtggacagc tgctcggaaa tgtttggcgg cctggacatc tgtgccgtca
1081 aggctgtcca cagcaaggat ggcagagatt acatcatcga ggtaatggac agctcaatgc
1141 cgctgattgg agagcatgtg gaagaggaca gacagctgat ggccgacctt gttgtctcca
1201 aaatgagcca gctcccgatg ccaggaggca cagcgccctc ccccctcaga ccttgggctc
1261 cacagattaa atcagcgaaa tccccagggc aagcccagct ggggcctcag ctaggccagc
1321 cccagccacg cccacctccg caaggaggcc ctcgccaagc tcagtctcct cagccccaga
1381 gatctggaag cccctcccaa cagaggctct ccccacaagg ccagcagccc ctgagccccc
1441 agtccggatc tccacagcag caaaggtcac caggctctcc gcagctatcc cgggcatcca
1501 gtggcagctc cccaaaccag gcctccaagc caggtgccac cctcgcctca cagccccggc
1561 cccctgtgca gggccgtagt acctcccagc agggtgaaga gtccaagaag ccagcaccac
1621 cccatccgca tctcaacaaa tctcagtccc tgactaacag cctcagcaca tccgacacct
1681 cccagcgtgg gaccccaagt gaagacgagg ccaaggctga aaccatccgc aacctgagga
1741 agtcttttgc cagcctgttc tctgactaac gccatccagg ctgggagggg aagagtgctc
1801 tgcta
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