LOCUS BC075054 763 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ephrin-A5, mRNA (cDNA clone MGC:103964
IMAGE:30915365), complete cds.
ACCESSION BC075054
VERSION BC075054.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 763)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 763)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC075054.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 3 Row: A Column: 6.
FEATURES Location/Qualifiers
source 1..763
/db_xref="H-InvDB:HIT000265561"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:103964 IMAGE:30915365"
/tissue_type="Brain, PCR rescued clones"
/clone_lib="NIH_MGC_272"
/lab_host="DH10B"
/note="Vector: pCR4 Topo TA with reversed insert"
gene 1..763
/gene="EFNA5"
/gene_synonym="AF1"
/gene_synonym="EFL5"
/gene_synonym="LERK7"
/gene_synonym="RAGS"
/db_xref="GeneID:1946"
/db_xref="HGNC:HGNC:3225"
/db_xref="MIM:601535"
CDS 50..736
/gene="EFNA5"
/gene_synonym="AF1"
/gene_synonym="EFL5"
/gene_synonym="LERK7"
/gene_synonym="RAGS"
/codon_start=1
/product="ephrin-A5"
/protein_id="AAH75054.1"
/db_xref="GeneID:1946"
/db_xref="HGNC:HGNC:3225"
/db_xref="MIM:601535"
/translation="MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQ
RGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWEC
NRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRP
TNSCMKTIGVHDRVFDVNDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAIL
LFLLAMLLTL"
BASE COUNT 184 a 207 c 182 g 190 t
ORIGIN
1 ctctctcccc ggagtggcgc gtcgggggct ccgccgctgg ccaggcgtga tgttgcacgt
61 ggagatgttg acgctggtgt ttctggtgct ctggatgtgt gtgttcagcc aggacccggg
121 ctccaaggcc gtcgccgacc gctacgctgt ctactggaac agcagcaacc ccagattcca
181 gaggggtgac taccatattg atgtctgtat caatgactac ctggatgttt tctgccctca
241 ctatgaggac tccgtcccag aagataagac tgagcgctat gtcctctaca tggtgaactt
301 tgatggctac agtgcctgcg accacacttc caaagggttc aagagatggg aatgtaaccg
361 gcctcactct ccaaatggac cgctgaagtt ctctgaaaaa ttccagctct tcactccctt
421 ttctctagga tttgaattca ggccaggccg agaatatttc tacatctcct ctgcaatccc
481 agataatgga agaaggtcct gtctaaagct caaagtcttt gtgagaccaa caaatagctg
541 tatgaaaact ataggtgttc atgatcgtgt tttcgatgtt aacgacaaag tagaaaattc
601 attagaacca gcagatgaca ccgtacatga gtcagccgag ccatcccgcg gcgagaacgc
661 ggcacaaaca ccaaggatac ccagccgcct tttggcaatc ctactgttcc tcctggcgat
721 gcttttgaca ttatagcaca gtctcctccc atcacttgtc aca
//