LOCUS BC075019 1437 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 49, mRNA (cDNA clone
MGC:104001 IMAGE:30915409), complete cds.
ACCESSION BC075019
VERSION BC075019.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1437)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1437)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC075019.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 3 Row: E Column: 2.
FEATURES Location/Qualifiers
source 1..1437
/db_xref="H-InvDB:HIT000265526"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104001 IMAGE:30915409"
/tissue_type="Pooled tissue, PCR rescued clones"
/clone_lib="NIH_MGC_271"
/note="Vector: pCR4 Topo TA with reversed insert"
gene 1..1437
/gene="TRIM49"
/db_xref="GeneID:57093"
/db_xref="HGNC:HGNC:13431"
/db_xref="MIM:606124"
CDS 29..1387
/gene="TRIM49"
/codon_start=1
/product="tripartite motif-containing 49"
/protein_id="AAH75019.1"
/db_xref="GeneID:57093"
/db_xref="HGNC:HGNC:13431"
/db_xref="MIM:606124"
/translation="MNSGILQVFQGELICPLCMNYFIDPVTIDCGHSFCRPCFYLNWQ
DIPFLVQCSECTKSTEQINLKTNIHLKKMASLARKVSLWLFLSSEEQMCGTHRETKKI
FCEVDRSLLCLLCSSSQEHRYHRHRPIEWAAEEHREKLLQKMQSLWEKACENHRNLNV
ETTRTRCWKDYVNLRLEAIRAEYQKMPAFHHEEEKHNLEMLKKKGKEIFHRLHLSKAK
MAHRMEILRGMYEELNEMCHKPDVELLQAFGDILHRSESVLLHMPQPLNPELSAGPIT
GLRDRLNQFRVHITLHHEEANSDIFLYEILRSMCIGCDHQDVPYFTATPRSFLAWGVQ
TFTSGKYYWEVHVGDSWNWAFGVCNMYRKEKNQNEKIDGKAGLFLLGCVKNDIQCSLF
TTSPLMLQYIPKPTSRVGLFLDCEAKTVSFVDVNQSSLIYTIPNCSFSPPLRPIFCCI
HF"
BASE COUNT 420 a 308 c 334 g 375 t
ORIGIN
1 gggaaccatt aaaagaactc caggaaacat gaattctgga atcttacagg tctttcaggg
61 ggaactcatc tgccccctgt gcatgaacta cttcatagac ccggtcacca tagactgtgg
121 gcacagcttt tgcaggcctt gtttctacct caactggcaa gacatcccat ttcttgtcca
181 gtgctctgaa tgcacaaagt caacagagca gataaacctc aaaaccaaca ttcatttgaa
241 gaagatggct tctcttgcca gaaaagtcag tctctggcta ttcctgagct ctgaggagca
301 aatgtgtggc actcacaggg agacaaagaa gatattctgt gaagtggaca ggagcctgct
361 ctgtttgctg tgctccagct ctcaggagca ccggtatcac agacaccgtc ccattgagtg
421 ggctgctgag gaacaccggg agaagctttt acagaaaatg cagtctttgt gggaaaaagc
481 ttgtgaaaat cacagaaacc tgaatgtgga aaccaccaga accagatgct ggaaggatta
541 tgtgaattta aggctagaag caattagagc tgagtatcag aagatgcctg catttcatca
601 tgaagaagaa aaacataatt tggagatgct gaaaaagaag gggaaagaaa tttttcatcg
661 acttcattta agtaaagcca aaatggctca taggatggag attttaagag gaatgtatga
721 ggagctgaac gaaatgtgcc ataaaccaga tgtggagcta cttcaggctt ttggagacat
781 attacacagg agtgagtccg tgctgctgca catgccccag cctctgaatc cagagctcag
841 tgcagggccc atcactggac tgagggacag gctcaaccaa ttccgagtgc atattactct
901 gcatcatgaa gaagccaaca gtgatatctt tctgtatgaa attttgagaa gcatgtgtat
961 tggatgtgac catcaagatg taccctattt cactgcaaca cctagaagtt ttcttgcatg
1021 gggtgttcag actttcacct cgggcaaata ttactgggag gtccatgtag gggactcctg
1081 gaattgggct tttggtgtct gtaatatgta tcggaaagag aagaatcaga atgagaagat
1141 agatggaaag gcgggactct ttcttcttgg gtgtgttaag aatgacattc aatgcagtct
1201 ctttaccacc tccccactta tgctgcaata tatcccaaaa cctaccagcc gagtaggatt
1261 attcctggat tgtgaggcta agactgtgag ctttgttgat gttaatcaaa gctccctaat
1321 atacaccatc cctaattgct ctttctcacc tcctctcagg cctatctttt gctgtattca
1381 cttctgacca gagacaaatc agaaatgtgt tcacatgctg tgggaacccc tttatcc
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