LOCUS BC074968 724 bp mRNA linear HUM 22-FEB-2005
DEFINITION Homo sapiens C-type lectin domain family 4, member C, transcript
variant 1, mRNA (cDNA clone MGC:104060 IMAGE:30915508), complete
cds.
ACCESSION BC074968
VERSION BC074968.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 724)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 724)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC074968.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 4 Row: E Column: 5.
FEATURES Location/Qualifiers
source 1..724
/db_xref="H-InvDB:HIT000265475"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104060 IMAGE:30915508"
/tissue_type="Pooled tissue, PCR rescued clones"
/clone_lib="NIH_MGC_271"
/note="Vector: pCR4 Topo TA with reversed insert"
gene 1..724
/gene="CLEC4C"
/gene_synonym="BDCA2"
/gene_synonym="CLECSF11"
/gene_synonym="CLECSF7"
/gene_synonym="DLEC"
/gene_synonym="HECL"
/gene_synonym="PRO34150"
/db_xref="GeneID:170482"
/db_xref="MIM:606677"
CDS 45..686
/gene="CLEC4C"
/gene_synonym="BDCA2"
/gene_synonym="CLECSF11"
/gene_synonym="CLECSF7"
/gene_synonym="DLEC"
/gene_synonym="HECL"
/gene_synonym="PRO34150"
/codon_start=1
/product="C-type lectin domain family 4, member C, isoform
1"
/protein_id="AAH74968.1"
/db_xref="GeneID:170482"
/db_xref="MIM:606677"
/translation="MVPEEEPQDREKGLWWFQLKVWSMAVVSILLLSVCFTVSSVVPH
NFMYSKTVKRLSKLREYQQYHPSLTCVMEGKDIEDWSCCPTPWTSFQSSCYFISTGMQ
SWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSSYFLGLSDPGGRRHWQWVDQTP
YNENVTFWHSGEPNNLDERCAIINFRSSEEWGWNDIHCHVPQKSICKMKKIYI"
BASE COUNT 203 a 148 c 180 g 193 t
ORIGIN
1 gcacccacct gatagaggaa gtccaaaggg tgtgcgcaca cacaatggtg cctgaagaag
61 agcctcaaga ccgagagaaa ggactctggt ggttccagtt gaaggtctgg tccatggcag
121 tcgtatccat cttgctcctc agtgtctgtt tcactgtgag ttctgtggtg cctcacaatt
181 ttatgtatag caaaactgtc aagaggctgt ccaagttacg agagtatcaa cagtatcatc
241 caagcctgac ctgcgtcatg gaaggaaagg acatagaaga ttggagctgc tgcccaaccc
301 cttggacttc atttcagtct agttgctact ttatttctac tgggatgcaa tcttggacta
361 agagtcaaaa gaactgttct gtgatggggg ctgatctggt ggtgatcaac accagggaag
421 aacaggattt catcattcag aatctgaaaa gaaattcttc ttattttctg gggctgtcag
481 atccaggggg tcggcgacat tggcaatggg ttgaccagac accatacaat gaaaatgtca
541 cattctggca ctcaggtgaa cccaataacc ttgatgagcg ttgtgcgata ataaatttcc
601 gttcttcaga agaatggggc tggaatgaca ttcactgtca tgtacctcag aagtcaattt
661 gcaagatgaa gaagatctac atataaatga aatattctcc ctggaaatgt gtttgggttg
721 gcat
//