LOCUS BC074839 1332 bp mRNA linear HUM 04-AUG-2004
DEFINITION Homo sapiens potassium inwardly-rectifying channel, subfamily J,
member 5, mRNA (cDNA clone MGC:104097 IMAGE:30915550), complete
cds.
ACCESSION BC074839
VERSION BC074839.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1332)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1332)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC074839.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 4 Row: H Column: 11.
FEATURES Location/Qualifiers
source 1..1332
/db_xref="H-InvDB:HIT000265346"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:104097 IMAGE:30915550"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_273"
/lab_host="DH10B"
/note="Vector: pCR4 Topo TA with reversed insert"
gene 1..1332
/gene="KCNJ5"
/gene_synonym="CIR"
/gene_synonym="GIRK4"
/gene_synonym="KATP1"
/gene_synonym="KIR3.4"
/db_xref="GeneID:3762"
/db_xref="MIM:600734"
CDS 31..1290
/gene="KCNJ5"
/gene_synonym="CIR"
/gene_synonym="GIRK4"
/gene_synonym="KATP1"
/gene_synonym="KIR3.4"
/codon_start=1
/product="potassium inwardly-rectifying channel J5"
/protein_id="AAH74839.2"
/db_xref="GeneID:3762"
/db_xref="MIM:600734"
/translation="MAGDSRNAMNQDMEIGVTPWDPKKIPKQARDYVPIATDRTRLLA
EGKKPRQRYMEKSGKCNVHHGNVQETYRYLSDLFTTLVDLKWRFNLLVFTMVYTVTWL
FFGFIWWLIAYIRGDLDHVGDQEWIPCVENLSGFVSAFLFSIETETTIGYGFRVITEK
CPEGIILLLVQAILGSIVNAFMVGCMFVKISQPKKRAETLMFSNNAVISMRDEKLCLM
FRVGDLRNSHIVEASIRAKLIKSRQTKEGEFIPLNQTDINVGFDTGDDRLFLVSPLII
SHEINEKSPFWEMSQAQLHQEEFEVVVILEGMVEATGMTCQARSSYMDTEVLWGHRFT
PVLTLEKGFYEVDYNTFHDTYETNTPSCCAKELAEMKREGRLLQYLPSPPLLGGCAEA
GLDAEAEQNEEDEPKGLGGSREARGSV"
BASE COUNT 300 a 383 c 376 g 273 t
ORIGIN
1 ggaagctccg atctcaacaa catcccagct atggctggcg attctaggaa tgccatgaac
61 caggacatgg agattggagt cactccctgg gaccccaaga agattccaaa acaggcccgc
121 gattatgtcc ccattgccac agaccgtacg cgcctgctgg ccgagggcaa gaagccacgc
181 cagcgctaca tggagaagag cggcaagtgc aacgtgcacc acggcaacgt ccaggagacc
241 taccggtacc tgagtgacct cttcaccacc ctggtggacc tcaagtggcg cttcaacttg
301 ctcgtcttca ccatggttta cactgtcacc tggctgttct tcggcttcat ttggtggctc
361 attgcttata tccggggtga cctggaccat gttggcgacc aagagtggat tccttgtgtt
421 gaaaacctca gtggcttcgt gtccgctttc ctgttctcca ttgagaccga aacaaccatt
481 gggtatggct tccgagtcat cacagagaag tgtccagagg ggattatact cctcttggtc
541 caggccatcc tgggctccat cgtcaatgcc ttcatggtgg ggtgcatgtt tgtcaagatc
601 agccagccca agaagagagc ggagaccctc atgttttcca acaacgcagt catctccatg
661 cgggacgaga agctgtgcct catgttccgg gtgggcgacc tccgcaactc ccacatcgtg
721 gaggcctcca tccgggccaa gctcatcaag tcccggcaga ccaaagaggg ggagttcatc
781 cccctgaacc agacagacat caacgtgggc tttgacacgg gcgacgaccg cctcttcctg
841 gtgtctcctc tgatcatctc ccacgagatc aacgagaaga gccctttctg ggagatgtct
901 caggctcagc tgcatcagga agagtttgaa gttgtggtca ttctagaagg gatggtggaa
961 gccacaggca tgacctgcca agcccggagc tcctacatgg atacagaggt gctctggggc
1021 caccgattca caccagtcct caccttggaa aagggcttct atgaggtgga ctacaacacc
1081 ttccatgata cctatgagac caacacaccc agctgctgtg ccaaggagct ggcagaaatg
1141 aagagggaag gccggctcct ccagtacctc cccagccccc cactgctggg gggctgtgct
1201 gaggcagggc tggatgcaga ggctgagcag aatgaagaag atgagcccaa ggggctgggt
1261 gggtccaggg aggccagggg ctcggtgtga ggggtgcagc ctccctaaga cctcctgtca
1321 ctggcttcag tg
//