LOCUS BC074838 1329 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens potassium inwardly-rectifying channel, subfamily J,
member 5, mRNA (cDNA clone MGC:103936 IMAGE:30915329), complete
cds.
ACCESSION BC074838
VERSION BC074838.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1329)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1329)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC074838.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 2 Row: F Column: 6.
FEATURES Location/Qualifiers
source 1..1329
/db_xref="H-InvDB:HIT000265345"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:103936 IMAGE:30915329"
/tissue_type="Lung, PCR rescued clones"
/clone_lib="NIH_MGC_273"
/lab_host="DH10B"
/note="Vector: pCR4 Topo TA with reversed insert"
gene 1..1329
/gene="KCNJ5"
/gene_synonym="CIR"
/gene_synonym="GIRK4"
/gene_synonym="KATP1"
/gene_synonym="KIR3.4"
/db_xref="GeneID:3762"
/db_xref="HGNC:HGNC:6266"
/db_xref="MIM:600734"
CDS 28..1287
/gene="KCNJ5"
/gene_synonym="CIR"
/gene_synonym="GIRK4"
/gene_synonym="KATP1"
/gene_synonym="KIR3.4"
/codon_start=1
/product="potassium inwardly-rectifying channel, subfamily
J, member 5"
/protein_id="AAH74838.2"
/db_xref="GeneID:3762"
/db_xref="HGNC:HGNC:6266"
/db_xref="MIM:600734"
/translation="MAGDSRNAMNQDMEIGVTPWDPKKIPKQARDYVPIATDRTRLLA
EGKKPRQRYMEKSGKCNVHHGNVQETYRYLSDLFTTLVDLKWRFNLLVFTMVYTVTWL
FFGFIWWLIAYIRGDLDHVGDQEWIPCVENLSGFVSAFLFSIETETTIGYGFRVITEK
CPEGIILLLVQAILGSIVNAFMVGCMFVKISQPKKRAETLMFSNNAVISMRDEKLCLM
FRVGDLRNSHIVEASIRAKLIKSRQTKEGEFIPLNQTDINVGFDTGDDRLFLVSPLII
SHEINEKSPFWEMSQAQLHQEEFEVVVILEGMVEATGMTCQARSSYMDTEVLWGHRFT
PVLTLEKGFYEVDYNTFHDTYETNTPSCCAKELAEMKREGRLLQYLPSPPLLGGCAEA
GLDAEAEQNEEDEPKGLGGSREARGSV"
BASE COUNT 299 a 383 c 374 g 273 t
ORIGIN
1 agctccgatc tcaacaacat cccagctatg gctggcgatt ctaggaatgc catgaaccag
61 gacatggaga ttggagtcac tccctgggac cccaagaaga ttccaaaaca ggcccgcgat
121 tatgtcccca ttgccacaga ccgtacgcgc ctgctggccg agggcaagaa gccacgccag
181 cgctacatgg agaagagcgg caagtgcaac gtgcaccacg gcaacgtcca ggagacctac
241 cggtacctga gtgacctctt caccaccctg gtggacctca agtggcgctt caacttgctc
301 gtcttcacca tggtttacac tgtcacctgg ctgttcttcg gcttcatttg gtggctcatt
361 gcttatatcc ggggtgacct ggaccatgtt ggcgaccaag agtggattcc ttgtgttgaa
421 aacctcagtg gcttcgtgtc cgctttcctg ttctccattg agaccgaaac aaccattggg
481 tatggcttcc gagtcatcac agagaagtgt ccagagggga ttatactcct cttggtccag
541 gccatcctgg gctccatcgt caatgccttc atggtggggt gcatgtttgt caagatcagc
601 cagcccaaga agagagcgga gaccctcatg ttttccaaca acgcagtcat ctccatgcgg
661 gacgagaagc tgtgcctcat gttccgggtg ggcgacctcc gcaactccca catcgtggag
721 gcctccatcc gggccaagct catcaagtcc cggcagacca aagaggggga gttcatcccc
781 ctgaaccaga cagacatcaa cgtgggcttt gacacgggcg acgaccgcct cttcctggtg
841 tctcctctga tcatctccca cgagatcaac gagaagagcc ctttctggga gatgtctcag
901 gctcagctgc atcaggaaga gtttgaagtt gtggtcattc tagaagggat ggtggaagcc
961 acaggcatga cctgccaagc ccggagctcc tacatggata cagaggtgct ctggggccac
1021 cgattcacac cagtcctcac cttggaaaag ggcttctatg aggtggacta caacaccttc
1081 catgatacct atgagaccaa cacacccagc tgctgtgcca aggagctggc agaaatgaag
1141 agggaaggcc ggctcctcca gtacctcccc agccccccac tgctgggggg ctgtgctgag
1201 gcagggctgg atgcagaggc tgagcagaat gaagaagatg agcccaaggg gctgggtggg
1261 tccagggagg ccaggggctc ggtgtgaggg gtgcagcctc cctaagacct cctgtcactg
1321 gcttcagtg
//