LOCUS BC074752 1239 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens potassium inwardly-rectifying channel, subfamily J,
member 1, mRNA (cDNA clone MGC:103829 IMAGE:30915211), complete
cds.
ACCESSION BC074752
VERSION BC074752.2
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1239)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1239)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (25-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT On Aug 4, 2004 this sequence version replaced BC074752.1.
Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Genome Sequence Centre, British Columbia Cancer
Center
cDNA Library Preparation: British Columbia Cancer Research Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBU Plate: 1 Row: D Column: 8.
FEATURES Location/Qualifiers
source 1..1239
/db_xref="H-InvDB:HIT000265259"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:103829 IMAGE:30915211"
/tissue_type="Pooled tissue, PCR rescued clones"
/clone_lib="NIH_MGC_271"
/note="Vector: pCR4 Topo TA with reversed insert"
gene 1..1239
/gene="KCNJ1"
/gene_synonym="KIR1.1"
/gene_synonym="ROMK"
/gene_synonym="ROMK1"
/db_xref="GeneID:3758"
/db_xref="HGNC:HGNC:6255"
/db_xref="MIM:600359"
CDS 42..1217
/gene="KCNJ1"
/gene_synonym="KIR1.1"
/gene_synonym="ROMK"
/gene_synonym="ROMK1"
/codon_start=1
/product="potassium inwardly-rectifying channel, subfamily
J, member 1"
/protein_id="AAH74752.1"
/db_xref="GeneID:3758"
/db_xref="HGNC:HGNC:6255"
/db_xref="MIM:600359"
/translation="MNASSRNVFDTLIRVLTESMFKHLRKWVVTRFFGHSRQRARLVS
KDGRCNIEFGNVEAQSRFIFFVDIWTTVLDLKWRYKMTIFITAFLGSWFFFGLLWYAV
AYIHKDLPEFHPSANHTPCVENINGLTSAFLFSLETQVTIGYGFRCVTEQCATAIFLL
IFQSILGVIINSFMCGAILAKISRPKKRAKTITFSKNAVISKRGGKLCLLIRVANLRK
SLLIGSHIYGKLLKTTVTPEGETIILDQININFVVDAGNENLFFISPLTIYHVIDHNS
PFFHMAAETLLQQDFELVVFLDGTVESTSATCQVRTSYVPEEVLWGYRFAPIVSKTKE
GKYRVDFHNFSKTVEVETPHCAMCLYNEKDVRARMKRGYDNPNFILSEVNETDDTKM"
BASE COUNT 336 a 279 c 282 g 342 t
ORIGIN
1 aaagaccaac aaccagcacc acttccttgc tttttccagc catgaatgct tccagtcgga
61 atgtgtttga cacgttgatc agggtgttga cagaaagtat gttcaaacat cttcggaaat
121 gggtcgtcac tcgctttttt gggcattctc ggcaaagagc aaggctagtc tccaaagatg
181 gaaggtgcaa catagaattt ggcaatgtgg aggcacagtc aaggtttata ttctttgtgg
241 acatctggac aacggtactt gacctcaagt ggagatacaa aatgaccatt ttcatcacag
301 ccttcttggg gagttggttt ttctttggtc tcctgtggta tgcagtagcg tacattcaca
361 aagacctccc ggaattccat ccttctgcca atcacactcc ctgtgtggag aatattaatg
421 gcttgacctc agcttttctg ttttctctgg agactcaagt gaccattgga tatggattca
481 ggtgtgtgac agaacagtgt gccactgcca tttttctgct tatctttcag tctatacttg
541 gagttataat caattctttc atgtgtgggg ccatcttagc caagatctcc aggcccaaaa
601 aacgtgccaa gaccattacg ttcagcaaga acgcagtgat cagcaaacgg ggagggaagc
661 tttgcctcct aatccgagtg gctaatctca ggaagagcct tcttattggc agtcacattt
721 atggaaagct tctgaagacc acagtcactc ctgaaggaga gaccattatt ttggaccaga
781 tcaatatcaa ctttgtagtt gacgctggga atgaaaattt attcttcatc tccccattga
841 caatttacca tgtcattgat cacaacagcc ctttcttcca catggcagcg gagacccttc
901 tccagcagga ctttgaatta gtggtgtttt tagatggcac agtggagtcc accagtgcta
961 cctgccaagt ccggacatcc tatgtcccag aggaggtgct ttggggctac cgttttgctc
1021 ccatagtatc caagacaaag gaagggaaat accgagtgga tttccataac tttagcaaga
1081 cagtggaagt ggagacccct cactgtgcca tgtgccttta taatgagaaa gatgttagag
1141 ccaggatgaa gagaggctat gacaacccca acttcatctt gtcagaagtc aatgaaacag
1201 atgacaccaa aatgtaacag tggcttttca acgggagta
//