LOCUS BC073960 3127 bp mRNA linear HTC 27-OCT-2008 DEFINITION Homo sapiens ubiquitin specific peptidase 11, mRNA (cDNA clone IMAGE:6182961), with apparent retained intron. ACCESSION BC073960 VERSION BC073960.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3127) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3127) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 174 Row: m Column: 7 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..3127 /db_xref="H-InvDB:HIT000265182" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6182961" /tissue_type="Peripheral Nervous System, dorsal root ganglion" /clone_lib="Lupski_dorsal_root_ganglion" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" BASE COUNT 722 a 856 c 930 g 619 t ORIGIN 1 gagaacggac ggcgatggcg acggtcgcag caaatccagc tgctgctgcg gcggctgtgg 61 cggcggcagc ggcggtgact gaggatagag agccacagca cgaggagctg ccaggcctgg 121 acagccagtg gcgccagata gaaaacggcg agagtgggcg agaacgtcca ctgcgggccg 181 gcgaaagctg gtgaggctgg gctgcggtgg agcctcggca gagggaacgg ttccttgtgg 241 agaagcactg gtataagcag tgggaggcat acgtgcaggg aggggaccag gactccagca 301 ccttccctgg ctgcatcaac aatgccacac tctttcaaga tgagataaac tggcgcctca 361 aggagggact ggtggaaggc gaggattatg tgctgctccc agcagctgct tggcattacc 421 tggtcagctg gtatggtcta gagcatggcc agccacccat tgaacgcaag gtcatagagc 481 tgcccaacat ccagaaggtc gaagtgtacc cagtagaact gctgcttgtc cggcacaatg 541 atttgggcaa atctcacact gttcagttca gccataccga ttctattggc ctagtattgc 601 gcacagctcg ggagcggttt ctggtggagc cccaggaaga cactcggctt tgggccaaga 661 actcagaagg ctctttggat aggttgtatg acacacacat cacggttctc gatgcggccc 721 ttgagactgg gcagttgatc atcatggaga cccgcaagaa agatggcact tggcccagcg 781 cacagctgca tgtcatgaac aacaacatgt cggaagagga tgaggacttc aagggtcagc 841 caggcatctg tggcctcacc aatctgggca acacgtgctt catgaactcg gccctgcagt 901 gcctcagcaa tgtgccacag ctcaccgagt acttcctcaa caactgctac ctggaggagc 961 tcaacttccg caacccactg ggcatgaagg gtgagatcgc agaggcctat gcagacctgg 1021 tgaagcaggc gtggtctggc caccaccgct ccattgtgcc acatgtgttc aagaacaagg 1081 ttggccattt tgcatcccaa tttctgggct accagcagca tgactctcag gagctgctgt 1141 cattcctcct ggacgggctg catgaggacc ttaatcgggt gaagaagaag gagtatgtgg 1201 agctgtgcga tgctgctggg cgaccggatc aggaggtggc acaggaggca tggcaaaacc 1261 acaaacggcg gaacgattct gtgatcgtgg acactttcca cggcctcttc aagtccacgc 1321 tggtgtgccc cgattgtggc aatgtatctg tgaccttcga ccccttctgc tacctcagtg 1381 ttccactgcc tatcagccac aagagggtct tggaggtctt ctttatcccc atggatccgc 1441 gccgcaagcc agagcagcac cggctcgtgg tccccaagaa aggcaagatc tcggatctat 1501 gtgtggctct gtccaaacac acgggcatct cgccagagag gatgatggtg gctgatgtct 1561 tcagtcaccg cttctataag ctctatcagc tagaggagcc tctgagcagc atcttggacc 1621 gtgatgatat cttcgtctat gaggtgtcag gtcgcattga ggccattgag ggctcaagag 1681 aggacatcgt ggttcctgtc tacctgcggg agcgcacccc tgcccgtgac tacaacaact 1741 cctactacgg cctgatgctt tttggacacc ccctcctggt atcagtgccc cgggaccgct 1801 tcacctggga gggcctgtat aacgtcctga tgtaccggct ctcacgctac gtgaccaaac 1861 ccaactcaga tgatgaggac gatggggatg agaaagaaga tgacgaggag gataaagatg 1921 acgtccctgg gccctcaact gggggcagcc tccgagaccc tgagccagag caggctgggc 1981 ccagctctgg agtcacgaac aggtgcccgt tcctcctgga caattgcctt ggcacatctc 2041 agtggccccc aaggcgacga cgcaagcagc tgttcaccct gcagacggtg aactccaatg 2101 ggaccagcga ccgcacaacc tcccctgaag aagtccatgc ccagccgtac attgctatcg 2161 actgggagcc agagatgaag aagcgttact atgacgaggt agaggctgag ggctacgtga 2221 agcatgactg cgtcgggtac gtgatgaaga aggctcccgt gcggctgcag gagtgcattg 2281 agctcttcac cactgtggag accctggaga aggaaaaccc ctggtactgc ccttcctgca 2341 agcagcacca gctggcaacc aagaagctgg acctgtggat gctgccggag attctcatca 2401 tccacctgaa acgcttttcc tacaccaagt tctcccgaga gaagctggac accctcgtgg 2461 agtttcctat ccggtcaggg gccagggaga ggatggctgg gggaaggcag ggaaaggagg 2521 gggtgtacca gtattaaccc tctccccacc cacagggacc tggacttctc tgagtttgtc 2581 atccagccac agaatgagtc gaatccggag ctgtacaaat atgacctcat cgcggtttcc 2641 aaccattatg ggggcatgcg tgatggacac tgtatgtgcc aggctgtggg tggggcctgc 2701 cctgggggtt ctgggcaggg gggcgatcag gaccttccca gtgagtgact agggatgtga 2761 gccagtggtg aggttatcgt ggtgggagga gtgacaagag tgaatctgga cacttctgag 2821 aggcaggaag ggtaggcgag gataactctc cttccctttc agacacaaca tttgcctgca 2881 acaaggacag cggccagtgg cactactttg atgacaacag cgtctcccct gtcaatgaga 2941 atcagatcga gtccaaggca gcctatgtcc tcttctacca acgccaggac gtggcgcgac 3001 gcctgctgtc cccggccggc tcatctggcg ccccagcctc ccctgcctgc agctccccac 3061 ccagctctga gttcatggat gttaattgag agccctgggt cctgccacag aaaaaaaaaa 3121 aaaaaaa //