LOCUS BC073954 1711 bp mRNA linear HUM 21-JUL-2006
DEFINITION Homo sapiens FERM and PDZ domain containing 2, mRNA (cDNA clone
IMAGE:5752993), complete cds.
ACCESSION BC073954
VERSION BC073954.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1711)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1711)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: c Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63252915
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1711
/db_xref="H-InvDB:HIT000265177"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5752993"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1711
/gene="FRMPD2"
/gene_synonym="MGC35285"
/gene_synonym="PDZK5C"
/db_xref="GeneID:143162"
/db_xref="HGNC:HGNC:28572"
CDS 148..1110
/gene="FRMPD2"
/gene_synonym="MGC35285"
/gene_synonym="PDZK5C"
/codon_start=1
/product="FERM and PDZ domain containing 2"
/protein_id="AAH73954.1"
/db_xref="GeneID:143162"
/db_xref="HGNC:HGNC:28572"
/translation="MTSIPFPGDRLLQVDGVILCGLTHKQAVQCLKGPGQVARLVLER
RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGF
SFVQMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVL
HLLRGAPQEVTLLLCRPPPGALPELEQEWQTPELSADKEFTRATCTDSCTSPILDQED
SWRDSASPDAGEGLGLRPESSQKAIREAQWGQNRERPWASSLTHSPESHPHLCKLHQE
RDESTLATSLEKDVRQNCYSVCDIMRLGRYSFSSPLTRLSTDIF"
BASE COUNT 455 a 430 c 419 g 407 t
ORIGIN
1 tgctcagaga ggcaggattc ctgctgactc cagggggaca cctggcacct cagcttcctt
61 tcccacttct ccaggctgca tggaggggtg ccgggcaggg gcctcctgga agggaacctc
121 ctgcagcctc aagcaccagg tcatgacatg acatctatcc ctttcccagg tgaccgactc
181 ctgcaggtgg atggagtgat tctgtgcggc ctcacccaca agcaggctgt gcagtgcctg
241 aagggtcctg ggcaggttgc aagactggtc ttagagagaa gagtccccag gagtacacag
301 cagtgtcctt ctgctaatga cagcatggga gatgaacgca cggctgtttc cttggtaaca
361 gccttgcctg gcaggccttc gagctgtgtc tcagtgacag atggtcctaa gtttgaagtc
421 aaactaaaaa agaatgccaa tggtttggga ttcagtttcg tgcagatgga gaaagagagc
481 tgcagccatc tcaaaagtga tcttgtgagg attaagaggc tctttccggg gcagccagct
541 gaggagaatg gggccattgc agctggtgac attatcctgg ccgtgaatgg aaggtccacg
601 gaaggcctca tcttccagga ggtgctgcat ttactgagag gggccccaca ggaagtcacg
661 ctcctccttt gccgaccccc tccaggtgcg ctgcctgagc tggagcagga atggcagaca
721 cctgaactct cagctgacaa agaattcacc agggcaacat gtactgactc atgtaccagc
781 cccatcctgg atcaagagga cagctggagg gacagtgcct ccccagatgc aggggaaggc
841 ctgggtctca ggccagagtc ttcccaaaag gccatcagag aggcacaatg gggccaaaac
901 agagagagac cttgggccag ttccttgaca cattctcctg agtcccaccc tcatttatgc
961 aaacttcacc aagaaaggga tgaatcaaca ttggcgacct ctttggaaaa ggatgtgagg
1021 caaaactgct attcagtttg tgatatcatg agacttggaa gatattcctt ctcatctcct
1081 ctaaccagac tttcgacaga tattttctga gcaccttctc tgcatgtctg cagtgctgtg
1141 taaaatgccc tacctttgca tggactattc tttctaatca agaggcgtgt gtggcgaact
1201 tggggcagcc cctggaagtc ttgttctttg accattacgt ctgcggctgc atcaccagat
1261 aatgagcttc accactcgtc tgcctcctgt gtccttccgc ggggagtaaa tgtcacttca
1321 gcttgccgca tctctaaata ggcaaatttt cagtgctcag aaaaggacct gatctttgca
1381 caaagtgctt tgatggttgc ctgcttgagt cactcccaat cccttcctga agccctttct
1441 ttataattct tctgttgaaa tagccatcat attcacagta ctaatcacag catctcacat
1501 ttactaaaaa cttaccccat accaggaacc cagagttggg ggggctgtgt cagaattatg
1561 taatttacgt gtcccaataa tcctagacgc ttcttgacca tctagttttg tcaaatgaga
1621 aaactgaggt tccaaagaag tcaataaact tgtccaaagt ctgaccgaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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