LOCUS BC073872 1816 bp mRNA linear HUM 09-JUN-2008 DEFINITION Homo sapiens opsin 3, mRNA (cDNA clone IMAGE:4452104), complete cds. ACCESSION BC073872 VERSION BC073872.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1816) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1816) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (23-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 166 Row: d Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7657070 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..1816 /db_xref="H-InvDB:HIT000265096" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:4452104" /tissue_type="Kidney, hypernephroma" /clone_lib="NIH_MGC_89" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1816 /gene="OPN3" /db_xref="GeneID:23596" /db_xref="HGNC:HGNC:14007" /db_xref="MIM:606695" CDS 71..499 /gene="OPN3" /codon_start=1 /product="opsin 3" /protein_id="AAH73872.1" /db_xref="GeneID:23596" /db_xref="HGNC:HGNC:14007" /db_xref="MIM:606695" /translation="MYSGNRSGGHGYWDGGGAAGAEGPAPAGTLSPAPLFSPGTYERL ALLLGSIGLLGVGNNLLVLVLYYKFQRLRTPTHLLLVNISLSDLLVSLFGVTFTFVSC LRNGWVWDTVGCVWDGFSGSLFASLCGRSSDNSSDQDFKI" BASE COUNT 477 a 436 c 403 g 500 t ORIGIN 1 gtgcggagcg cgccgcgacc cccgccgcaa gctgagcgcc tccgcccgcc aggcgcgccg 61 gcgccgggcc atgtactcgg ggaaccgcag cggcggccac ggctactggg acggcggcgg 121 ggccgcgggc gctgaggggc cggcgccggc ggggacactg agccccgcgc ccctcttcag 181 ccccggcacc tacgagcgcc tggcgctgct gctgggctcc attgggctgc tgggcgtcgg 241 caacaacctg ctggtgctcg tcctctacta caagttccag cggctccgca ctcccactca 301 cctcctcctg gtcaacatca gcctcagcga cctgctggtg tccctcttcg gggtcacctt 361 taccttcgtg tcctgcctga ggaacggctg ggtgtgggac accgtgggct gcgtgtggga 421 cgggtttagc ggcagcctct tcgcttcgtt gtgtggaaga tcttcagaca attcaagtga 481 tcaagatttt aaaatatgaa aagaaactgg ccaaaatgtg ctttttaatg atattcacct 541 tcctggtctg ttggatgcct tatatcgtga tctgcttctt ggtggttaat ggtcatggtc 601 acctggtcac tccaacaata tctattgttt cgtacctctt tgctaaatcg aacactgtat 661 acaatccagt gatttatgtc ttcatgatca gaaagtttcg aagatccctt ttgcagcttc 721 tgtgcctccg actgctgagg tgccagaggc ctgctaaaga cctaccagca gctggaagtg 781 aaatgcagat cagacccatt gtgatgtcac agaaagatgg ggacaggcca aagaaaaaag 841 tgactttcaa ctcttcttcc atcattttta tcatcaccag tgatgaatca ctgtcagttg 901 acgacagcga caaaaccaat gggtccaaag ttgatgtaat ccaagttcgt cctttgtagg 961 aatgaagaat ggcaacgaaa gatggggcct taaattggat gccacttttg gactttcatc 1021 ataagaagtg tctggaatac ccgttctatg taatatcaac agaaccttgt ggtccagcag 1081 gaaatccgaa ttgcccatat gctcttgggc ctcaggaaga ggttgaacaa aaacaaattc 1141 ttttaattca acgggtgctt tacataatga aaaaaccact tgtggcacac gatgggcatc 1201 taacatcatc atcttctaat gtgttggaga ttttcatttc aaatatattt tttaaattac 1261 tctattttcc aaaacacgtt aatgcatttt tctcgaaaat accttactgt aaaaataact 1321 gtcgcgtaca catgtgtgaa gtagctagaa catactgaat tttttttgta ctgttggact 1381 ctattcagtg tcatgtccta tatctgatca agttatcaag gagataattc tagaatgaaa 1441 aagaaaatcc tcttgttgga aacaaaagac gttttatatg tgcagtatga caaagaggag 1501 tttcagagac aactttgaat ccttgtcagc ctggagacca gcaccagagg aatctacaag 1561 gcaaactccc atatatttgc ttcccccaaa ttgctgcccc tacagactca aagctctttt 1621 tctttgtttt gttgtttctc taaaaattta ctgttctttg tcgatgctat ataagccagg 1681 gagttctaag acgccagctc tttgagattt gctcattccc ctgtatttcc cacatatata 1741 ttacacatac ccgctaataa atttatgttt gtttttctct tgtcaaaaaa aaaaaaaaaa 1801 aaaaaaaaaa aaaaaa //