LOCUS BC073169 973 bp mRNA linear HUM 03-NOV-2008
DEFINITION Homo sapiens chromosome 17 open reading frame 42, mRNA (cDNA clone
IMAGE:6192569), complete cds.
ACCESSION BC073169
VERSION BC073169.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 973)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 973)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (14-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. James R. Lupski
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: n Column: 16
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..973
/db_xref="H-InvDB:HIT000264964"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6192569"
/tissue_type="Peripheral Nervous System, sympathetic
trunk"
/clone_lib="Lupski_sympathetic_trunk"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..973
/gene="C17orf42"
/db_xref="GeneID:79736"
/db_xref="HGNC:HGNC:26223"
CDS 300..776
/gene="C17orf42"
/codon_start=1
/product="C17orf42 protein"
/protein_id="AAH73169.1"
/db_xref="GeneID:79736"
/db_xref="HGNC:HGNC:26223"
/translation="MRGIYSSSVYLEEISSIISKMPKADFYVLKKTGLSIQNSSLFPI
LLHFHIMEAMLYALLNKTFAQDGQHQVLSMNRNAVGKHFELMIGDSRTSGKELVKQFL
FDSILKADPRVFFPSDKIVHYRQMFLSTELQRVEELYDSLLQAIAFYELAVFDSQP"
BASE COUNT 323 a 171 c 194 g 285 t
ORIGIN
1 attgcttcgt ggaagaaggt ccatcaatat cgtagagcac agagaaaact ttgggccatt
61 tcagaattta gagagtttaa tgaatgtgcc cttgtttaag tataaaagta cagttcaagt
121 ttgtaactcc atactttgtc caaagactgg acgggaaaaa agaaagtcac cggaaaaccg
181 gttcctgaga aagctcctca aaccagacat agaaagagaa agacttaaga attgcctggg
241 ctcaccttga tcgtaagttg acagtgctgg actggcagca aagtgaccgt tggagtttaa
301 tgagaggaat atactcatca tcagtctatt tagaagagat ttcctcgatc atttcaaaga
361 tgcctaaagc agatttctat gttctgaaaa aaacaggact ttccattcag aactcatctc
421 tgtttccaat actgttacat tttcatatca tggaagccat gctgtatgcc ttattaaata
481 aaacttttgc ccaggatggg cagcatcagg tgctgagcat gaatcgaaat gcagtgggga
541 agcattttga actgatgatt ggtgactccc ggactagtgg aaaagagcta gtgaagcagt
601 ttctcttcga ttctatactg aaggcggatc ctcgggtgtt cttcccatca gataaaatag
661 ttcactacag acagatgttt ttatctactg aactacaaag agtagaagag ctttatgatt
721 cattattaca agctattgcc ttctatgaat tagcagtgtt tgactctcag ccttagaatt
781 ctgaggttaa cgtgctaaag tataattatt agctctaacg taacaccaac tgttgtgaac
841 atccatgtta ttggaaaaga acacattttc agtgtatttt agatgtttaa attctgactt
901 ttggctatta aatggtttac acaataagcc aagaccaaat caataaacat tttatgagaa
961 aaaaaaaaaa aaa
//