LOCUS BC072443 1990 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chromosome 5 open reading frame 13, mRNA (cDNA clone
MGC:87994 IMAGE:6162335), complete cds.
ACCESSION BC072443
VERSION BC072443.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1990)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1990)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: k Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4758865.
FEATURES Location/Qualifiers
source 1..1990
/db_xref="H-InvDB:HIT000264887"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87994 IMAGE:6162335"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1990
/gene="C5orf13"
/gene_synonym="D4S114"
/gene_synonym="P311"
/gene_synonym="PRO1873"
/gene_synonym="PTZ17"
/db_xref="GeneID:9315"
/db_xref="HGNC:HGNC:16834"
/db_xref="MIM:607332"
CDS 136..342
/gene="C5orf13"
/gene_synonym="D4S114"
/gene_synonym="P311"
/gene_synonym="PRO1873"
/gene_synonym="PTZ17"
/codon_start=1
/product="chromosome 5 open reading frame 13"
/protein_id="AAH72443.1"
/db_xref="GeneID:9315"
/db_xref="HGNC:HGNC:16834"
/db_xref="MIM:607332"
/translation="MVYYPELFVWVSQEPFPNKDMEGRLPKGRLPVPKEVNRKKNDET
NAASLTPLGSSELRSPRISYLHFF"
BASE COUNT 555 a 415 c 400 g 620 t
ORIGIN
1 tgttgccctt tttcaaccac atttgtgttt caggtgtaga gaggagagag agtgaacagg
61 gagcggggct tttgtctgtt ggtctccctg gactgaagag agggagaata gaagcccaag
121 actaagattc tcaaaatggt ttattaccca gaactctttg tctgggtcag tcaagaacca
181 tttccaaaca aggacatgga gggaaggctt cctaagggaa gacttcctgt cccaaaggaa
241 gtgaaccgca agaagaacga tgagacaaac gctgcctccc tgactccact gggcagcagt
301 gaactccgct ccccaagaat cagttacctc cacttttttt aatcgtaaca cctccatttg
361 tattacatat ggtgtatggg tattgatgag gtcatggtat catatatggg atttttttct
421 gtgtaaatca tcaagtataa gaagaaacta tgggactctg agccttgctt tagagaattt
481 acagtggaca aataggtgtc atcaaaccag tttttaatca ttctgactca agtgaaaacg
541 ctcagaattt cacactgtga atccacgttt acaaccctta caggtgggcc ttcaggcctg
601 gttcgctaca acaatgtctt ccacaactca aactcccacc gcgctcacac aaccggtcca
661 ctcctgcctt ttcactcaca cagctcccga ctgcttcttg cagaggctga gagtcccccc
721 cccacctttt ttttcattta gatgtaacaa acctagtagt ttatgttcat caattgtctg
781 tatatctcta tattttatcc atgtactctt ttgatgtata gaagtagttt gaaactcatt
841 gtttccttgt ggtaagtgac cgagatgctg ccacaggacc tgagacactg atgaatggtg
901 ctattttgga ctttcaacat gctccttggc gaggtagctc tgatggagtt attttttatt
961 tccatgttct aagaaggtgt tggtactctg tttccctgaa tgttgttctc tagactggat
1021 tgacttgttt tccttgtgtc ttcagtgtgg ctttcttcct cagtgttgta ggttgagcga
1081 atgctaccag agtgtgagag accattgtct cgttggctgg cgctcacgga catgcagtca
1141 cggtagcggg agcaatcaca aaactgtaat ttacttacca aatctcttcc tttccgtagc
1201 ctcgcctgcc tgacttagag aaagaaaagc aataatttta caggcatttt gaggtgtctc
1261 tttgggttct ttctgtttga aaggatattt gtcgaaaaaa agagcaaaac cgttttaaat
1321 aaactccccc tggaaaaaaa cccaaaacac tggcatctga gtaggaatat gaaaatgaca
1381 ccttttccaa atattaaatt ggaaaacaag gtctacaaaa tcatgatact tttttaaaag
1441 gcagagcatt cttttttcgg caattttgat aagcaaggtg tagatttaca tttttgtcct
1501 tgctcccaac gaaatggata aacaaaaata aattaccatc tactcatgga atgttgttgt
1561 gttagccagt ctgaaagccc accttaattt ttatataact gtctttagct cttcttttga
1621 cagggcaggc cttgttctga actgtttcgc ttctgactgt taaacaccga tgacgcatgc
1681 actgcacttc ttcgttttct tcttgctccc ccattggcct gagtttcttg tgcattactc
1741 ctctccctcc ttcgttagaa taggtatatc agctgtgtaa atagagcaag aaaacagtat
1801 tctgcatctg tggcatttat gtagagttgc agttgtgtac tgctgaaaat gcaggctttt
1861 gtaacagtgt gatctttact gatgcactca tgacaagtac ccaatgtatt ttagctattt
1921 tagtagtatt tgttcaataa atacgcaagc tgtaaggtaa aaaaaaaaaa aaaaaaaaaa
1981 aaaaaaaaaa
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