LOCUS BC072395 1740 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens FERM and PDZ domain containing 2 like 1, mRNA (cDNA
clone IMAGE:5753238), complete cds.
ACCESSION BC072395
VERSION BC072395.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1740)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1740)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 174 Row: c Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 63252915
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1740
/db_xref="H-InvDB:HIT000264840"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5753238"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1740
/gene="FRMPD2L1"
/gene_synonym="yX59F3.2"
/db_xref="GeneID:728798"
/db_xref="HGNC:HGNC:16843"
CDS 147..1109
/gene="FRMPD2L1"
/gene_synonym="yX59F3.2"
/codon_start=1
/product="FERM and PDZ domain containing 2 like 1"
/protein_id="AAH72395.1"
/db_xref="GeneID:728798"
/db_xref="HGNC:HGNC:16843"
/translation="MTSIPFPGDRLLQVDGVILCGLTHKQAVQCLKGPGQVARLVLER
RVPRSTQQCPSANDSMGDERTAVSLVTALPGRPSSCVSVTDGPKFEVKLKKNANGLGF
SFVQMEKESCSHLKSDLVRIKRLFPGQPAEENGAIAAGDIILAVNGRSTEGLIFQEVL
HLLRGAPQEVTLLLCRPPPGALPEMEQEWQTPELSADKEFTRATCTDSCTSPILDQED
SWRDSASPDAGEGLGLRPESSQKAIREAQWGQNRERPWASSLTHSPESHPHLCKLHQE
RDESTLATSLEKDVRQNCYSVCDIMRLGRYSFSSPLTRLSTDIF"
BASE COUNT 489 a 426 c 416 g 409 t
ORIGIN
1 attcccggga tcaggattcc tgctgactcc agggggacac ctggcacctc agcttccttt
61 cccacttctc caggctgcat ggaggggtgc cgggcagggg cctcctggaa gggaacctcc
121 tgcagcctca agcaccaggt catgacatga catctatccc tttcccaggt gaccgactcc
181 tgcaggtgga tggagtgatt ctgtgcggcc tcacccacaa gcaggctgtg cagtgcctga
241 agggtcctgg gcaggttgca agactggtct tagagagaag agtccccagg agtacacagc
301 agtgtccttc tgctaatgac agcatgggag atgaacgcac ggctgtttcc ttggtaacag
361 ccttgcctgg caggccttcg agctgtgtct cggtgacaga tggtcctaag tttgaagtca
421 aactaaaaaa gaatgccaat ggtttgggat tcagtttcgt gcagatggag aaagagagct
481 gcagccatct caaaagtgat cttgtgagga ttaagaggct ctttccgggg cagccagctg
541 aggagaatgg ggccattgca gctggtgaca ttatcctggc cgtgaatgga aggtccacgg
601 aaggcctcat cttccaggag gtgctgcatt tactgagagg ggccccacag gaagtcacgc
661 tcctcctttg ccgaccccct ccaggtgcgc tgcctgagat ggagcaggaa tggcagacac
721 ctgaactctc agctgacaaa gaattcacca gggcaacatg tactgactca tgtaccagcc
781 ccatcctgga tcaagaggac agctggaggg acagtgcctc cccagatgca ggggaaggcc
841 tgggtctcag gccagagtct tcccaaaagg ccatcagaga ggcacaatgg ggccaaaaca
901 gagagagacc ttgggccagt tccttgacac attctcctga gtcccaccct catttatgca
961 aacttcacca agaaagggat gaatcaacat tggcgacctc tttggaaaag gatgtgaggc
1021 aaaactgcta ttcagtttgt gatatcatga gacttggaag atattccttc tcatctcctc
1081 taaccagact ttcgacagat attttctgag caccttctct gcatgtctgc agtgctgtgt
1141 aaaatgccct acctttgcat ggactattct ttctaatcaa gaggcgtgtg tggcgaactt
1201 ggggcagccc ctggaagtct tgttctttga ccattacgtc tgcggctgca tcaccagata
1261 atgagcttca ccacttgtct gcctcctgtg tccttccgcg gggagtaaat gtcacttcag
1321 cttgccgcat ctctaaatag gcaaattttc agtgctcaga aaaggacctg atctttgcac
1381 aaagtgcttt gatggttgcc tgcttgagtc actcccaatc ccttcctgaa gccctttctt
1441 tataattctt ctgttgaaat agccatcata ttcacagtac taatcacagc atctcacatt
1501 tactaaaaac ttaccccata ccaggaaccc agagttgggg gggctgtgtc agaattatgt
1561 aatttacgtg tcccaataat cctagatgct tcttgaccat ctagttttgt caaatgagaa
1621 aactgaggtt ccaaagaagt caataaactt gtccaaagtc aaaaaaaaaa aaaaaaaaaa
1681 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
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