LOCUS BC071934 2771 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protocadherin beta 13, mRNA (cDNA clone MGC:88620
IMAGE:6383780), complete cds.
ACCESSION BC071934
VERSION BC071934.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2771)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2771)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP/Gazdar
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: m Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 14195594.
FEATURES Location/Qualifiers
source 1..2771
/db_xref="H-InvDB:HIT000264743"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88620 IMAGE:6383780"
/tissue_type="Lung, large cell carcinoma"
/clone_lib="NIH_MGC_18"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2771
/gene="PCDHB13"
/gene_synonym="PCDH-BETA13"
/db_xref="GeneID:56123"
/db_xref="HGNC:HGNC:8684"
/db_xref="MIM:606339"
CDS 159..2555
/gene="PCDHB13"
/gene_synonym="PCDH-BETA13"
/codon_start=1
/product="protocadherin beta 13"
/protein_id="AAH71934.1"
/db_xref="GeneID:56123"
/db_xref="HGNC:HGNC:8684"
/db_xref="MIM:606339"
/translation="MEASGKLICRQRQVLFSFLLLGLSLAGAAEPRSYSVVEETEGSS
FVTNLAKDLGLEQREFSRRGVRVVSRGNKLHLQLNQETADLLLNEKLDREDLCGHTEP
CVLRFQVLLESPFEFFQAELQVIDINDHSPVFLDKQMLVKVSESSPPGTTFPLKNAED
LDVGQNNIENYIISPNSYFRVLTRKRSDGRKYPELVLDKALDREEEAELRLTLTALDG
GSPPRSGTAQVYIEVLDVNDNAPEFEQPFYRVQISEDSPVGFLVVKVSATDVDTGVNG
EISYSLFQASEEIGKTFKINPLTGEIELKKQLDFEKLQSYEVNIEARDAGTFSGKCTV
LIQVIDVNDHAPEVTMSAFTSPIPENAPETVVALFSVSDLDSGENGKISCSIQEDLPF
LLKSAENFYTLLTERPLDRESRAEYNITITVTDLGTPMLITQLNMTVLIADVNDNAPA
FTQTSYTLFVRENNSPALHIRSVSATDRDSGTNAQVTYSLLPPQDPHLPLTSLVSINA
DNGHLFALRSLDYEALQGFQFRVGASDHGSPALSSEALVRVVVLDANDNSPFVLYPLQ
NGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATELGLFGVWAHNGEV
RTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPTQAQ
ADLLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASVGRCLVPEGPLPGHLVDMS
GTRTLSQSYQYEVCLAGGSGTNEFKFLKPIIPNFPPQCPGKEIQGNSTFPNNFGFNIQ
"
BASE COUNT 652 a 760 c 720 g 639 t
ORIGIN
1 ggagcttgga tgccaaaggg aggacggctg ggtcctctgg agaggactac tcactggcat
61 atttctgagg tatctgtaga ataaccacag cctcagatac tggggacttt acagtcccac
121 agaaccgtcc tcccaggaag ctgaatccag caagaacaat ggaggccagc gggaagctca
181 tttgcagaca aaggcaagtc cttttttcct ttctcctttt gggcttatct ctggcgggcg
241 cggcggaacc tagaagctat tctgtggtgg aggaaactga gggcagctcc tttgtcacca
301 atttagcaaa ggacctgggt ctggagcaga gggaattctc caggcggggg gttagggttg
361 tttccagagg gaacaaacta catttgcagc tcaatcagga gaccgcggat ttgttgctaa
421 atgagaaatt ggaccgtgag gatctgtgcg gtcacacaga gccctgtgtg ctacgtttcc
481 aagtgttgct agagagtccc ttcgagtttt ttcaagctga gctgcaagta atagacataa
541 acgaccactc tccagtattt ctggacaaac aaatgttggt gaaagtatca gagagcagtc
601 ctcctgggac tacgtttcct ctgaagaatg ccgaagactt agatgtaggc caaaacaata
661 ttgagaacta tataatcagc cccaactcct attttcgggt cctcacccgc aaacgcagtg
721 atggcaggaa atacccagag ctggtgctgg acaaagcgct ggaccgagag gaagaagctg
781 agctcaggtt aacactcaca gcactggatg gtggctctcc gcccagatct ggcactgctc
841 aggtctacat cgaagtcctg gatgtcaacg ataatgcccc tgaatttgag cagcctttct
901 atagagtgca gatctctgag gacagtccgg taggcttcct ggttgtgaag gtctctgcca
961 cggatgtaga cacaggagtc aacggagaga tttcctattc acttttccaa gcttcagaag
1021 agattggcaa aacctttaag atcaatccct tgacaggaga aattgaacta aaaaaacaac
1081 tcgatttcga aaaacttcag tcctatgaag tcaatattga ggcaagagat gctggaacct
1141 tttctggaaa atgcaccgtt ctgattcaag tgatagatgt gaacgaccat gccccagaag
1201 ttaccatgtc tgcatttacc agcccaatac ctgagaacgc gcctgaaact gtggttgcac
1261 ttttcagtgt ttcagatctt gattcaggag aaaatgggaa aattagttgc tccattcagg
1321 aggatctacc cttcctcctg aaatccgcgg aaaactttta caccctacta acggagagac
1381 cactagacag agaaagcaga gcggaataca acatcactat cactgtcact gacttgggga
1441 cccctatgct gataacacag ctcaatatga ccgtgctgat cgccgatgtc aatgacaacg
1501 ctcccgcctt cacccaaacc tcctacaccc tgttcgtccg cgagaacaac agccccgccc
1561 tgcacatccg cagcgtcagc gctacagaca gagactcagg caccaacgcc caggtcacct
1621 actcgctgct gccgccccag gacccgcacc tgcccctcac atccctggtc tccatcaacg
1681 cggacaacgg ccacctgttc gccctcaggt ctctggacta cgaggccctg caggggttcc
1741 agttccgcgt gggcgcttca gaccacggct ccccggcgct gagcagcgag gcgctggtgc
1801 gcgtggtggt gctggacgcc aacgacaact cgcccttcgt gctgtacccg ctgcagaacg
1861 gctccgcgcc ctgcaccgag ctggtgcccc gggcggccga gccgggctac ctggtgacca
1921 aggtggtggc ggtggacggc gactcgggcc agaacgcctg gctgtcgtac cagctgctca
1981 aggccacgga gctcggtctg ttcggcgtgt gggcgcacaa tggcgaggtg cgcaccgcca
2041 ggctgctgag cgagcgcgac gcggccaagc acaggctggt ggtgctggtc aaggacaatg
2101 gcgagcctcc gcgctcggcc accgccacgc tgcacgtgct cctggtggac ggcttctccc
2161 agccctacct gcctctcccg gaggcggccc cgacccaggc ccaggccgac ttgctcaccg
2221 tctacctggt ggtggcgttg gcctcggtgt cttcgctctt cctcttttcg gtgctcctgt
2281 tcgtggcggt gcggctgtgt aggaggagca gggcggcctc ggtgggtcgc tgcttggtgc
2341 ccgagggccc ccttccaggg catcttgtgg acatgagcgg caccaggacc ctatcccaga
2401 gctaccagta tgaggtgtgt ctggcaggag gctcagggac caatgagttc aagttcctga
2461 agccgattat ccccaacttc cctccccagt gccctgggaa agaaatacaa ggaaattcta
2521 ccttccccaa taactttggg ttcaatattc agtgaccata gttgactttt acattccata
2581 ggtattttat tttgtggcat ttccatgcca atgtttattt cccccaattt gtgtgtatgt
2641 aatattgtac ggatttactc ttgatttttc tcatgttctt tctccctttg ttttaaagtg
2701 aacatttacc tttattcctg gttcttaaaa ggtgacaatt cattctttaa cccaaaaaaa
2761 aaaaaaaaaa a
//