LOCUS BC071892 2425 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens prolyl 4-hydroxylase, beta polypeptide, mRNA (cDNA clone MGC:88571 IMAGE:5443660), complete cds. ACCESSION BC071892 VERSION BC071892.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2425) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2425) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 58 Row: f Column: 1 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 20070124. FEATURES Location/Qualifiers source 1..2425 /db_xref="H-InvDB:HIT000264703" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:88571 IMAGE:5443660" /tissue_type="Skin, melanoma, amelanotic" /clone_lib="NIH_MGC_41" /lab_host="DH10B-R" /note="Vector: pOTB7" gene 1..2425 /gene="P4HB" /gene_synonym="DSI" /gene_synonym="GIT" /gene_synonym="P4Hbeta" /gene_synonym="PDI" /gene_synonym="PDIA1" /gene_synonym="PHDB" /gene_synonym="PO4HB" /gene_synonym="PROHB" /db_xref="GeneID:5034" /db_xref="HGNC:HGNC:8548" /db_xref="MIM:176790" CDS 4..1530 /gene="P4HB" /gene_synonym="DSI" /gene_synonym="GIT" /gene_synonym="P4Hbeta" /gene_synonym="PDI" /gene_synonym="PDIA1" /gene_synonym="PHDB" /gene_synonym="PO4HB" /gene_synonym="PROHB" /codon_start=1 /product="prolyl 4-hydroxylase, beta polypeptide" /protein_id="AAH71892.1" /db_xref="GeneID:5034" /db_xref="HGNC:HGNC:8548" /db_xref="MIM:176790" /translation="MLRRALLCLAVAALVRADAPEEEDHVLVLRKSNFAEALAAHKYL LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTI KFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGF FKDVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEG EVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFK TAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEEL TAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEF YAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEAVKVHSFPTLKFFPASA DRTVIDYNGERTLDGFKKFLESGGQDGAGDDDDLEDLEEAEEPDMEEDDDQKAVKDEL " BASE COUNT 581 a 658 c 690 g 496 t ORIGIN 1 gacatgctgc gccgcgctct gctgtgcctg gccgtggccg ccctggtgcg cgccgacgcc 61 cccgaggagg aggaccacgt cctggtgctg cggaaaagca acttcgcgga ggcgctggcg 121 gcccacaagt acctgctggt ggagttctat gccccttggt gtggccactg caaggctctg 181 gcccctgagt atgccaaagc cgctgggaag ctgaaggcag aaggttccga gatcaggttg 241 gccaaggtgg acgccacgga ggagtctgac ctggcccagc agtacggcgt gcgcggctat 301 cccaccatca agttcttcag gaatggagac acggcttccc ccaaggaata tacagctggc 361 agagaggctg atgacatcgt gaactggctg aagaagcgca cgggcccggc tgccaccacc 421 ctgcctgacg gcgcagctgc agagtccttg gtggagtcca gcgaggtggc tgtcatcggc 481 ttcttcaagg acgtggagtc ggactctgcc aagcagtttt tgcaggcagc agaggccatc 541 gatgacatac catttgggat cacttccaac agtgacgtgt tctccaaata ccagctcgac 601 aaagatgggg ttgtcctctt taagaagttt gatgaaggcc ggaacaactt tgaaggggag 661 gtcaccaagg agaacctgct ggactttatc aaacacaacc agctgcccct tgtcatcgag 721 ttcaccgagc agacagcccc gaagattttt ggaggtgaaa tcaagactca catcctgctg 781 ttcttgccca agagtgtgtc tgactatgac ggcaaactga gcaacttcaa aacagcagcc 841 gagagcttca agggcaagat cctgttcatc ttcatcgaca gcgaccacac cgacaaccag 901 cgcatcctcg agttctttgg cctgaagaag gaagagtgcc cggccgtgcg cctcatcacc 961 ctggaggagg agatgaccaa gtacaagccc gaatcggagg agctgacggc agagaggatc 1021 acagagttct gccaccgctt cctggagggc aaaatcaagc cccacctgat gagccaggag 1081 ctgccggagg actgggacaa gcagcctgtc aaggtgcttg ttgggaagaa ctttgaagac 1141 gtggcttttg atgagaaaaa aaacgtcttt gtggagttct atgccccatg gtgtggtcac 1201 tgcaaacagt tggctcccat ttgggataaa ctgggagaga cgtacaagga ccatgagaac 1261 atcgtcatcg ccaagatgga ctcgactgcc aacgaggtgg aggccgtcaa agtgcacagc 1321 ttccccacac tcaagttctt tcctgccagt gccgacagga cggtcattga ttacaacggg 1381 gaacgcacgc tggatggttt taagaaattc ctggagagcg gtggccagga tggggcaggg 1441 gatgatgacg atctcgagga cctggaagaa gcagaggagc cagacatgga ggaagacgat 1501 gatcagaaag ctgtgaaaga tgaactgtaa tacgcaaagc cagacccggg cgctgccgag 1561 acccctcggg ggctgcacac ccagcagcag cgcacgcctc cgaagcctgc ggcctcgctt 1621 gaaggagggc gtcgccggaa acccagggaa cctctctgaa gtgacacctc acccctacac 1681 accgtccgtt cacccccgtc tcttccttct gcttttcggt ttttggaaag ggatccatct 1741 ccaggcagcc caccctggtg gggcttgttt cctgaaacca tgatgtactt tttcatacat 1801 gagtctgtcc agagtgcttg ctaccgtgtt cggagtctcg ctgcctccct cccgcgggag 1861 gtttctcctc tttttgaaaa ttccgtctgt gggattttta gacatttttc gacatcaggg 1921 tatttgttcc accttggcca ggcctcctcg gagaagcttg tcccccgtgt gggagggacg 1981 gagccggact ggacatggtc actcagtacc gcctgcagtg tcgccatgac tgatcatggc 2041 tcttgcattt ttgggtaaat ggagacttcc ggatcctgtc agggtgtccc ccatgcctgg 2101 aagaggagct ggtggctgcc agccctgggg cccggcacag gcctgggcct tccccttccc 2161 tcaagccagg gctcctcctc ctgtcgtggg ctcattgtga ccactggcct ctctacagca 2221 cggcctgtgg cctgttcaag gcagaaccac gacccttgac tcccgggtgg ggaggtggcc 2281 aaggatgctg gagctgaatc agacgctgac agttcttcag gcatttctat ttcacaatcg 2341 aattgaacac attggccaaa taaagttgaa attttaaaaa aaaaaaaaaa aaaataaaaa 2401 aaaaataaaa aaaaaaaaaa aaaaa //