LOCUS BC071848 1466 bp mRNA linear HUM 30-JUN-2004
DEFINITION Homo sapiens reticulon 4, mRNA (cDNA clone IMAGE:4635625), complete
cds.
ACCESSION BC071848
VERSION BC071848.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1466)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1466)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: d Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24431932
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1466
/db_xref="H-InvDB:HIT000264661"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4635625"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_16"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1466
/gene="RTN4"
/gene_synonym="ASY"
/gene_synonym="NI220/250"
/gene_synonym="NOGO"
/gene_synonym="NSP"
/gene_synonym="NSP-CL"
/gene_synonym="RTN-X"
/db_xref="GeneID:57142"
/db_xref="MIM:604475"
CDS 77..1108
/gene="RTN4"
/gene_synonym="ASY"
/gene_synonym="NI220/250"
/gene_synonym="NOGO"
/gene_synonym="NSP"
/gene_synonym="NSP-CL"
/gene_synonym="RTN-X"
/codon_start=1
/product="RTN4 protein"
/protein_id="AAH71848.1"
/db_xref="GeneID:57142"
/db_xref="MIM:604475"
/translation="MEDEEEEEEEEEEDEDEDLEELEVLERKPAAGLSAAPVPTAPAA
GAPLMDFGNDFVPPAPRGPLPAAPPVAPERQPSWDPSPVSSTVPAPSPLSAAAVSPSK
LPEDDEPPARPPPPPPASVSPQAEPVWTPPAPAPAAPPSTPAAPKRRGSSGSVVVDLL
YWRDIKKTGVVFGASLFLLLSLTVFSIVSVTAYIALALLSVTISFRIYKGVIQAIQKS
DEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLM
WVFTYVGALFNGLTLLILALISLFSVPVIYERHQAQIDHYLGLANKNVKDAMAKIQAK
IPGLKRKAE"
BASE COUNT 333 a 394 c 391 g 348 t
ORIGIN
1 cacaaccgcc cgcggctctg agacgcggcc ccggcggcgg cggcagcagc tgcagcatca
61 tctccaccct ccagccatgg aagacgagga ggaagaagag gaggaggaag aggaggacga
121 ggacgaagac ctggaggagc tggaggtgct ggagaggaag cccgccgccg ggctgtccgc
181 ggccccagtg cccaccgccc ctgccgccgg cgcgcccctg atggacttcg gaaatgactt
241 cgtgccgccg gcgccccggg gacccctgcc ggccgctccc cccgtcgccc cggagcggca
301 gccgtcttgg gacccgagcc cggtgtcgtc gaccgtgccc gcgccatccc cgctgtctgc
361 tgccgcagtc tcgccctcca agctccctga ggacgacgag cctccggccc ggcctccccc
421 tcctcccccg gccagcgtga gcccccaggc agagcccgtg tggaccccgc cagccccggc
481 tcccgccgcg cccccctcca ccccggccgc gcccaagcgc aggggctcct cgggctcagt
541 ggttgttgac ctcctgtact ggagagacat taagaagact ggagtggtgt ttggtgccag
601 cctattcctg ctgctttcat tgacagtatt cagcattgtg agcgtaacag cctacattgc
661 cttggccctg ctctctgtga ccatcagctt taggatatac aagggtgtga tccaagctat
721 ccagaaatca gatgaaggcc acccattcag ggcatatctg gaatctgaag ttgctatatc
781 tgaggagttg gttcagaagt acagtaattc tgctcttggt catgtgaact gcacgataaa
841 ggaactcagg cgcctcttct tagttgatga tttagttgat tctctgaagt ttgcagtgtt
901 gatgtgggta tttacctatg ttggtgcctt gtttaatggt ctgacactac tgattttggc
961 tctcatttca ctcttcagtg ttcctgttat ttatgaacgg catcaggcac agatagatca
1021 ttatctagga cttgcaaata agaatgttaa agatgctatg gctaaaatcc aagcaaaaat
1081 ccctggattg aagcgcaaag ctgaatgaaa acgcccaaaa taattagtag gagttcatct
1141 ttaaagggga tattcatttg attatacggg ggagggtcag ggaagaacga accttgacgt
1201 tgcagtgcag tttcacagat cgttgttaga tctttatttt tagccatgca ctgttgtgag
1261 gaaaaattac ctgtcttgac tgccatgtgt tcatcatctt aagtattgta agctgctatg
1321 tatggattta aaccgtaatc atatcttttt cctatctgag gcactggtgg aataaaaaac
1381 ctgtatattt tactttgttg cagatagtct tgccgcatct tggcaagttg cagagatggt
1441 ggagctagaa aaaaaaaaaa aaaaaa
//