LOCUS BC071846 2767 bp mRNA linear HUM 06-OCT-2005
DEFINITION Homo sapiens ATG16 autophagy related 16-like 1 (S. cerevisiae),
mRNA (cDNA clone IMAGE:6651664), partial cds.
ACCESSION BC071846
VERSION BC071846.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2767)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2767)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 58 Row: p Column: 18.
FEATURES Location/Qualifiers
source 1..2767
/db_xref="H-InvDB:HIT000264660"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6651664"
/tissue_type="Breast, adenocarcinoma"
/clone_lib="NIH_MGC_107"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene <1..2767
/gene="ATG16L1"
/gene_synonym="FLJ00045"
/gene_synonym="FLJ10035"
/gene_synonym="FLJ10828"
/gene_synonym="FLJ22677"
/gene_synonym="WDR30"
/db_xref="GeneID:55054"
/db_xref="HGNC:HGNC:21498"
/db_xref="IMGT/GENE-DB:21498"
/db_xref="MIM:21498"
CDS <1..1430
/gene="ATG16L1"
/gene_synonym="FLJ00045"
/gene_synonym="FLJ10035"
/gene_synonym="FLJ10828"
/gene_synonym="FLJ22677"
/gene_synonym="WDR30"
/codon_start=3
/product="ATG16L1 protein"
/protein_id="AAH71846.1"
/db_xref="GeneID:55054"
/db_xref="HGNC:HGNC:21498"
/db_xref="IMGT/GENE-DB:21498"
/db_xref="MIM:21498"
/translation="NNQMQRKDREMQMNEAKIAECLQTISDLETECLDLRTKLCDLER
ANQTLKDEYDALQITFTALEGKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRR
RQARLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATRRSVSSFP
VPQDNVDTHPGSGKEVRVPATALCVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWE
VFGEKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTLTGHS
GKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGH
FDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAIKQ
TFSAPGFKCGSDWTRVVFSPDGSYVAAGSAEGSLYIWSVLTGKVEKVLSKQHSSSINA
VAWSPSGSHVVSVDKGCKAVLWAQY"
BASE COUNT 706 a 634 c 712 g 715 t
ORIGIN
1 tgaataacca aatgcagcgg aaggacaggg agatgcagat gaatgaagca aaaattgcag
61 aatgtttgca gactatctct gacctggaga cggagtgcct agacctgcgc actaagcttt
121 gtgaccttga aagagccaac cagaccctga aggatgaata tgatgccctg cagatcactt
181 ttactgcctt ggagggaaaa ctgaggaaaa ctacggaaga gaaccaggag ctggtcacca
241 gatggatggc tgagaaagcc caggaagcca atcggcttaa tgcagagaat gaaaaagact
301 ccaggaggcg gcaagcccgg ctgcagaaag agcttgcaga agcagcaaag gaacctctac
361 cagtcgaaca ggatgatgac attgaggtca ttgtggatga aacttctgat cacacagaag
421 agacctctcc tgtgcgagcc atcagcagag cagccacgag acgctctgtc tcttccttcc
481 cagtccccca ggacaatgtg gatactcatc ctggttctgg taaagaagtg agggtaccag
541 ctactgcctt gtgtgtcttc gatgcacatg atggggaagt caacgctgtg cagttcagtc
601 caggttcccg gttactggcc actggaggca tggaccgcag ggttaagctt tgggaagtat
661 ttggagaaaa atgtgagttc aagggttccc tatctggcag taatgcagga attacaagca
721 ttgaatttga tagtgctgga tcttacctct tagcagcttc aaatgatttt gcaagccgaa
781 tctggactgt ggatgattat cgattacggc acacactcac gggacacagt gggaaagtgc
841 tgtctgctaa gttcctgctg gacaatgcgc ggattgtctc aggaagtcac gaccggactc
901 tcaaactctg ggatctacgc agcaaagtct gcataaagac agtgtttgca ggatccagtt
961 gcaatgatat tgtctgcaca gagcaatgtg taatgagtgg acattttgac aagaaaattc
1021 gtttctggga cattcgatca gagagcatag ttcgagagat ggagctgttg ggaaagatta
1081 ctgccctgga cttaaaccca gaaaggactg agctcctgag ctgctcccgt gatgacttgc
1141 taaaagttat tgatctccga acaaatgcta tcaagcagac attcagtgca cctgggttca
1201 agtgcggctc tgactggacc agagttgtct tcagccctga tggcagttac gtggcggcag
1261 gctctgctga gggctctctg tatatctgga gtgtgctcac agggaaagtg gaaaaggttc
1321 tttcaaagca gcacagctca tccatcaatg cggtggcgtg gtcgccctct ggctcgcacg
1381 ttgtcagtgt ggacaaagga tgcaaagctg tgctgtgggc acagtactga cggggctctc
1441 agggctggga ggaccccagt gccctcctca gaagaagcac atgggctcct gcagccctgt
1501 cctggcaggt gatgtgctgg gtatagcatg gacctcccag agaagctcaa gctatgtggc
1561 actgtagctt tgccgtgaat gggatttctg aagatttgac tgaggtctct cttggcctgg
1621 aagaataaca ctgaaaaaac ctgacgctgc ggtcacttag cagaggctca ggttcttgcc
1681 ttgggaaaca ctactagctc tgaccttcca tacctcactt gggggagcac agggccccgc
1741 tgggcctcct caccaacggc agtgccaaaa tcagccccca catcaaggtg gtgttctctg
1801 tgctttctct cgtccttcca aagtcggttc tggcctaacg catgtcccaa caccttgggt
1861 tcatttgccc ggtgaactca ctttaagcat tggattaacg gaaactcccg aactacagac
1921 ccctccctgg tgggttgcat gaatgtgtct cattactgct gaaatgtcct cacatctctt
1981 tcactgttct tcagagcttt ctggctctct ttcccccaca aaattcgaca tatttaaaaa
2041 tctccgtgtg gctttaaaaa atggtttttt gtttttttgt ttttttgagg tgggagagga
2101 tgtgtgaaaa tcttttccag ggaaatgggt tcgctgcaga ggtaaggatg tgttcctgta
2161 tcgatctgca gacacccaga aggtgggtgc acactgcatg cttgggggtg ccaagggatt
2221 cgagacctcc aacatacttg tctgaaggtg gtgattctgg ccatggcccc tctgccaagc
2281 ctgtgtgcga tgcccttggt gctttagtgc aagaagccta ggctcagaag cacagcagcg
2341 ccatctttcc gtttcagggg ttgtgatgaa ggccaaggaa aaacatttat ctttactatt
2401 ttacctacgt ataaagtttt agttcattgg gtgtgcgaaa cacccttttt atcactttta
2461 aatttgcact ttattttttt tcttccatgc ttgttctctg gacatttggg gatgtgagtg
2521 ttagagctgg tgagagagga gtcaggtggc cttcccaccg atggtcctgg cctccacctg
2581 ccctctcttc cctgcctgat caccgctttc caatttgccc ttcagagaac ttaagtcaag
2641 gagagttgaa attcacaggc cagggcacat cttttattta tttcattatg ttggccaaca
2701 gaacttgatt gtaaataata ataaagaaat ctgttatata cttttcaaaa aaaaaaaaaa
2761 aaaaaaa
//