LOCUS BC071659 1251 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens major histocompatibility complex, class II, DR alpha, mRNA (cDNA clone MGC:87851 IMAGE:5162925), complete cds. ACCESSION BC071659 VERSION BC071659.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1251) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1251) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Life Technologies, Inc. cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 166 Row: g Column: 3 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 52426773. FEATURES Location/Qualifiers source 1..1251 /db_xref="H-InvDB:HIT000264484_04" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87851 IMAGE:5162925" /tissue_type="Colon, Kidney, Stomach, adult, whole pooled" /clone_lib="NIH_MGC_116" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..1251 /gene="HLA-DRA" /db_xref="GeneID:3122" /db_xref="HGNC:HGNC:4947" /db_xref="MIM:142860" CDS 49..813 /gene="HLA-DRA" /codon_start=1 /product="major histocompatibility complex, class II, DR alpha" /protein_id="AAH71659.1" /db_xref="GeneID:3122" /db_xref="HGNC:HGNC:4947" /db_xref="MIM:142860" /translation="MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQS GEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRS NYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSET VFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENV VCALGLTVGLVGIIIGTIFIIKGVRKSNAAERRGPL" BASE COUNT 337 a 302 c 284 g 328 t ORIGIN 1 cctcactccc gagctctact gactcccaaa agagcgccca agaagaaaat ggccataagt 61 ggagtccctg tgctaggatt tttcatcata gctgtgctga tgagcgctca ggaatcatgg 121 gctatcaaag aagaacatgt gatcatccag gccgagttct atctgaatcc tgaccaatca 181 ggcgagttta tgtttgactt tgatggtgat gagattttcc atgtggatat ggcaaagaag 241 gagacggtct ggcggcttga agaatttgga cgatttgcca gctttgaggc tcaaggtgca 301 ttggccaaca tagctgtgga caaagccaac ctggaaatca tgacaaagcg ctccaactat 361 actccgatca ccaatgtacc tccagaggta actgtgctca cgaacagccc tgtggaactg 421 agagagccca acgtcctcat ctgtttcatc gacaagttca ccccaccagt ggtcaatgtc 481 acgtggcttc gaaatggaaa acctgtcacc acaggagtgt cagagacagt cttcctgccc 541 agggaagacc accttttccg caagttccac tatctcccct tcctgccctc aactgaggac 601 gtttacgact gcagggtgga gcactggggc ttggatgagc ctcttctcaa gcactgggag 661 tttgatgctc caagccctct cccagagact acagagaacg tggtgtgtgc cctgggcctg 721 actgtgggtc tggtgggcat cattattggg accatcttca tcatcaaggg agtgcgcaaa 781 agcaatgcag cagaacgcag ggggcctctg taaggcacat ggaggtgatg gtgtttctta 841 gagagaagat cactgaagaa acttctgctt taatgacttt acaaagctgg caatattaca 901 atccttgacc tcagtgaaag cagtcatctt cagcgttttc cagccctata gccaccccaa 961 gtgtggttat gcctcctcga ttgctccgta ctctaacatc tagctggctt ccctgtctat 1021 tgccttttcc tgtatctatt ttcctctatt tcctatcatt ttattatcac catgcaatgc 1081 ctctggaata aaacatacag gagtctgtct ctgctatgga atgccccatg gggcatctct 1141 tgtgtactta ttgtttaagg tttcctcaaa ctgtgatttt tctgaacaca ataaactatt 1201 ttgatgatct tgggtggaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //