LOCUS       BC071659                1251 bp    mRNA    linear   HUM 15-JUL-2006
DEFINITION  Homo sapiens major histocompatibility complex, class II, DR alpha,
            mRNA (cDNA clone MGC:87851 IMAGE:5162925), complete cds.
ACCESSION   BC071659
VERSION     BC071659.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUN-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: Life Technologies, Inc.
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: Sequencing Group at the Stanford Human Genome
            Center, Stanford University School of Medicine, Stanford, CA  94305
            Web site:       http://www-shgc.stanford.edu
            Contact:  (Dickson, Mark) mcd@paxil.stanford.edu
            Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
            R. M.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 166 Row: g Column: 3
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 52426773.
FEATURES             Location/Qualifiers
     source          1..1251
                     /db_xref="H-InvDB:HIT000264484_04"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:87851 IMAGE:5162925"
                     /tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
                     /clone_lib="NIH_MGC_116"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..1251
                     /gene="HLA-DRA"
                     /db_xref="GeneID:3122"
                     /db_xref="HGNC:HGNC:4947"
                     /db_xref="MIM:142860"
     CDS             49..813
                     /gene="HLA-DRA"
                     /codon_start=1
                     /product="major histocompatibility complex, class II, DR
                     alpha"
                     /protein_id="AAH71659.1"
                     /db_xref="GeneID:3122"
                     /db_xref="HGNC:HGNC:4947"
                     /db_xref="MIM:142860"
                     /translation="MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQAEFYLNPDQS
                     GEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRS
                     NYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSET
                     VFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENV
                     VCALGLTVGLVGIIIGTIFIIKGVRKSNAAERRGPL"
BASE COUNT          337 a          302 c          284 g          328 t
ORIGIN      
        1 cctcactccc gagctctact gactcccaaa agagcgccca agaagaaaat ggccataagt
       61 ggagtccctg tgctaggatt tttcatcata gctgtgctga tgagcgctca ggaatcatgg
      121 gctatcaaag aagaacatgt gatcatccag gccgagttct atctgaatcc tgaccaatca
      181 ggcgagttta tgtttgactt tgatggtgat gagattttcc atgtggatat ggcaaagaag
      241 gagacggtct ggcggcttga agaatttgga cgatttgcca gctttgaggc tcaaggtgca
      301 ttggccaaca tagctgtgga caaagccaac ctggaaatca tgacaaagcg ctccaactat
      361 actccgatca ccaatgtacc tccagaggta actgtgctca cgaacagccc tgtggaactg
      421 agagagccca acgtcctcat ctgtttcatc gacaagttca ccccaccagt ggtcaatgtc
      481 acgtggcttc gaaatggaaa acctgtcacc acaggagtgt cagagacagt cttcctgccc
      541 agggaagacc accttttccg caagttccac tatctcccct tcctgccctc aactgaggac
      601 gtttacgact gcagggtgga gcactggggc ttggatgagc ctcttctcaa gcactgggag
      661 tttgatgctc caagccctct cccagagact acagagaacg tggtgtgtgc cctgggcctg
      721 actgtgggtc tggtgggcat cattattggg accatcttca tcatcaaggg agtgcgcaaa
      781 agcaatgcag cagaacgcag ggggcctctg taaggcacat ggaggtgatg gtgtttctta
      841 gagagaagat cactgaagaa acttctgctt taatgacttt acaaagctgg caatattaca
      901 atccttgacc tcagtgaaag cagtcatctt cagcgttttc cagccctata gccaccccaa
      961 gtgtggttat gcctcctcga ttgctccgta ctctaacatc tagctggctt ccctgtctat
     1021 tgccttttcc tgtatctatt ttcctctatt tcctatcatt ttattatcac catgcaatgc
     1081 ctctggaata aaacatacag gagtctgtct ctgctatgga atgccccatg gggcatctct
     1141 tgtgtactta ttgtttaagg tttcctcaaa ctgtgatttt tctgaacaca ataaactatt
     1201 ttgatgatct tgggtggaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//