LOCUS BC071611 5045 bp mRNA linear HUM 23-NOV-2007
DEFINITION Homo sapiens EFR3 homolog A (S. cerevisiae), mRNA (cDNA clone
IMAGE:5268464), partial cds.
ACCESSION BC071611
VERSION BC071611.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5045)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5045)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: n Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56711247.
FEATURES Location/Qualifiers
source 1..5045
/db_xref="H-InvDB:HIT000264439"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5268464"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene <1..5045
/gene="EFR3A"
/db_xref="GeneID:23167"
/db_xref="HGNC:HGNC:28970"
CDS <1..2668
/gene="EFR3A"
/codon_start=2
/product="EFR3A protein"
/protein_id="AAH71611.1"
/db_xref="GeneID:23167"
/db_xref="HGNC:HGNC:28970"
/translation="EEWAGGGSCRPLGCVTAGSASAPSTLRPSPFASFRPPRPSNGRH
GAVGAPCAAPLSLGAAASAVEIAMPTRVCCCCSALRPRYKRLVDNIFPEDPKDGLVKT
DMEKLTFYAVSAPEKLDRIGSYLAERLSRDVVRHRSGYVLIAMEALDQLLMACHSQSI
KPFVESFLHMVAKLLESGEPKLQVLGTNSFVKFANIEEDTPSYHRRYDFFVSRFSAMC
HSCHSDPEIRTEIRIAGIRGIQGVVRKTVNDELRATIWEPQHMDKIVPSLLFNMQKIE
EVDSRIGPPSSPSATDKEENPAVLAENCFRELLGRATFGNMNNAVRPVFAHLDHHKLW
DPNEFAVHCFKIIMYSIQAQYSHHVIQEILGHLDARKKDAPRVRAGIIQVLLEAVAIA
AKGSIGPTVLEVFNTLLKHLRLSVEFEANDLQGGSVGSVDLNTSSKDNDEKIVQNAII
QTIGFFGSNLPDYQRSEIMMFIMGKVPVFGTSTHTLDISQLGDLGTRRIQIMLLRSLL
MVTSGYKAKTIVTALPGSFLDPLLSPSLMEDYELRQLVLEVMHNLMDRHDNRAKLRGI
RIIPDVADLKIKREKICRQDTSFMKKNGQQLYRHIYLGCKEEDNVQKNYELLYTSLAL
ITIELANEEVVIDLIRLAIALQDSAIINEDNLPMFHRCGIMALVAAYLNFVSQMIAVP
AFCQHVSKVIEIRTMEAPYFLPEHIFRDKCMLPKSLEKHEKDLYFLTNKIAESLGGSG
YSVERLSVPYVPQVTDEDRLSRRKSIVDTVSIQVDILSNNVPSDDVVSNTEEITFEAL
KKAIDTSGMEEQEKEKRRLVIEKFQKAPFEEIAAQCESKANLLHDRLAQILELTIRPP
PSPSGTLTITSGHAQYQSVPVYEMKFPDLCVY"
BASE COUNT 1527 a 923 c 1021 g 1574 t
ORIGIN
1 agaggagtgg gctggcggcg gtagctgtcg cccgcttggt tgcgtgaccg cggggtccgc
61 gtccgctccc tccacccttc gcccttcgcc cttcgcctcg ttccggcctc cgcggcccag
121 caacggccgt catggtgccg tcggcgctcc ctgcgcggcc ccgctgagcc tcggtgcggc
181 ggcgagcgcg gtcgagatcg ccatgcctac ccgagtatgc tgctgctgtt ccgctttgcg
241 tcctcgctac aaacgcctgg tggacaacat attccctgaa gatccaaaag atggccttgt
301 gaaaactgat atggagaaat tgacatttta tgcagtatct gctccagaga aactggatcg
361 aattggttct tacctggcag aaaggttgag cagggatgtt gtcagacatc gttctgggta
421 tgttttgatt gctatggagg cactggacca acttctcatg gcttgccatt ctcaaagcat
481 taagccattt gtagaaagct ttcttcatat ggtggcaaag ctgctggaat cgggggaacc
541 aaagcttcaa gttcttggaa caaattcttt tgtcaaattt gcaaatattg aagaagacac
601 accatcctat cacagacgtt atgacttttt tgtgtctcga ttcagtgcca tgtgccattc
661 ctgtcatagt gatccagaaa tacgaacaga gatacgaatt gctggaatta gaggtattca
721 aggtgtggtt cgcaaaacag tcaacgatga acttcgggcc accatttggg aacctcagca
781 tatggataag attgttccat ccctcctgtt taacatgcaa aagatagaag aagttgacag
841 tcgcataggc cctccttctt ctccttctgc aactgacaaa gaagagaatc ctgctgtgct
901 ggctgaaaac tgtttcagag aactgctggg tcgagcaact tttgggaata tgaataatgc
961 tgttagacca gtttttgcgc atttagatca tcacaaactg tgggatccca atgaatttgc
1021 agttcactgc tttaaaatta taatgtattc cattcaggct cagtattctc accatgtgat
1081 ccaggagatt ctaggacacc ttgatgctcg taaaaaagat gctccccggg ttcgagcagg
1141 tattattcag gttctgttag aggctgttgc cattgctgct aaaggttcca taggtccgac
1201 agtgctggaa gtcttcaata cccttttgaa acatctgcgt ctcagcgttg aattcgaagc
1261 aaatgattta caggggggat ctgtaggcag tgtcgactta aatacaagtt ccaaagacaa
1321 tgatgagaag attgtgcaga atgctatcat ccaaacaata ggattttttg gaagtaacct
1381 accagattat cagaggtcag aaatcatgat gttcattatg gggaaagtac ctgtctttgg
1441 aacatctacc catactttgg atatcagtca actaggggat ttgggaacca ggagaattca
1501 gataatgttg ctgagatctt tgcttatggt gacctctgga tataaagcga agacgattgt
1561 tactgcactg ccagggtctt tcctggatcc tttgttatca ccatctctca tggaggacta
1621 cgaactgaga cagttggtct tggaagtaat gcataatctc atggatcgtc atgacaatag
1681 ggcaaagctt cgagggatca gaataatacc ggatgtagct gacctaaaga taaaaagaga
1741 aaaaatttgc agacaagaca caagtttcat gaaaaagaat gggcaacagc tgtatcggca
1801 catatatttg ggttgtaaag aggaagacaa cgttcagaaa aactatgaac tactttatac
1861 ttctcttgct cttataacta ttgaactggc taatgaagaa gtagttattg atctcattcg
1921 actggccatt gctttacagg acagtgcaat tatcaatgag gataatttgc caatgttcca
1981 tcgttgtgga atcatggcac tggttgcagc atacctcaac tttgtaagtc agatgatagc
2041 tgtccctgca ttttgccagc atgttagcaa ggttattgaa attcgaacta tggaagcccc
2101 ttattttcta ccagagcata tcttcagaga taagtgcatg cttccaaaat ctttagagaa
2161 gcatgaaaaa gatttgtact ttctgaccaa caagattgca gagtcgctag gtggaagtgg
2221 atatagtgtt gagagattgt cagttccgta tgtaccacaa gtaacagatg aagatcgact
2281 ttctagaaga aaaagcattg tggacaccgt atccattcag gtggatattt tatccaacaa
2341 tgttccttct gatgatgtgg ttagtaacac tgaagaaatc acttttgaag cattgaagaa
2401 agcaattgat accagtggaa tggaagaaca ggaaaaggaa aagaggcgtc ttgtgataga
2461 gaaatttcag aaagcacctt ttgaagaaat agcagcacag tgtgaatcca aagcaaattt
2521 gcttcatgat agacttgccc aaatattgga actcaccata cgtcctcctc ccagtccatc
2581 aggaacactg accattactt ctgggcatgc ccaataccaa tctgtcccag tctatgagat
2641 gaagtttcca gatctgtgtg tgtactgatc ggcgcatgaa gacctcagca tatgatttgt
2701 aaagcctaaa aattaaggcc aagctgagct ttcagggttt acttaatgtg tattaacata
2761 cttcttgaaa ataatgatgg aacatatctt taaccaaatg tttggcatac catattagaa
2821 gttttggagc tatatataat ttcgagtact ttcaaagata gatttatgcc atgttaattt
2881 gctttgaggt tcctgttgcc tttttaagtt gaacatgttt tggtttcact ttattccact
2941 gttaagtagt atgttttaaa cttttcacaa atgtaatgtt ttttaaaaag taagccttca
3001 gaggattgaa actgtataaa ttgtttatct cttaaacatc tacacagccg cttagatgta
3061 gaatttttgt tgttgttttc tgcaaaggca gatacattta aatatattcc tagtcctggg
3121 gctgcaaaac tgttcggtgg ctttttgtcc ccatgcttta gataagctgg gataggcacc
3181 ttgctattca gttactataa taatatgtga taggcattcc tcatcttctt cacaataata
3241 ggacatctgt tgaatagcat tcctcgaata taaccctaaa aacgccatac tttaaattgt
3301 ctggttcttg taatattgtg tttcctgcca agagtttgac cattctgctt gagaagtgta
3361 gagcttactc ttggagtacc aaactgtgca atatttttac atcataagat gtattagttt
3421 acaggctgtg ctttgaaatt atagtagtat tttgctgtgg ctccattaat taaatgagat
3481 atatatttag tgcagaaaaa agacatttaa aacagctatt agttcacctg tgaagagtct
3541 gtacattttg atttctatta agagcacatt tatttacatt tgtatattat tttaaatcct
3601 catagtcaaa aaattctcca gatggacttt taatttgtaa gatttgaact gtgacttgta
3661 tacatctgtt tagaatcaat tatatttgaa aagctgcctg tgttttaaca gtcaagtgtg
3721 ctaaagtttg tcaatttaag ctgcttttga tttcagctac caagatcaca ggtgcactct
3781 acacataaca ctgacagacc cataacatta catacatctt agtgaattct atcacatggt
3841 aaaatgaaca gctttctttg taactcataa aattctctta ggacattttt ataaagtcac
3901 ctgtttatag ttctatcttt tcagattcca tttcttttta cataaaacag catacatatc
3961 aaaaactgta gcctagaata cagtttaatt tttggctttt gtttttgttt aaaaaattgc
4021 agtgaagaat gggatgtttg tgtttatggc tatttgggca cctttagtag aaacagacaa
4081 aagtaaggaa acgataatag gacaagcata cttgaaaatt tctgaatact taaacaaaag
4141 cgcaacatct tgaaaaccag tctagtcatt gaaacctatg aaatgacact gaaagatcct
4201 gggctgcttc ttaaataagt agatcagcaa gacttgtttc agagtgacag tggagtcgtt
4261 accgctggag gactaaaggg ccctgtggca gctgtcactg gaactttgcc tcttgatcag
4321 gaaaaatgct tcaccagtcc gtaaagccaa gttgtatttt ttttattgcc cttttttcct
4381 tctgtatttt taaagaagga tgttaatttt tgactatata ttttaaaaaa atctaagcag
4441 ggggacatgc aaaaacaatc atcatccact tggatgtcat tttatagatt aacactgtgt
4501 gcttttgtat ggaaaaaata tatataattt aatagtataa aaaataaaat atatattcat
4561 ttgcacttac gtgaaacaca aactttgctc tacaaaattt cgtgtttctt agtgatttta
4621 aaatgcatgt attgcatgta aaggaaaacc attacaatta atgtttatca cacctttatc
4681 ttggtctttg ttgatttggg ttttgttggg gtttttgtta ctgtttttaa attacagtag
4741 gcttctatat atcctggatt tctgaactgg tcttgttgac aaggattccc aagaaatgga
4801 tcttttcact ggctgactct cccatatctg caagagattc tgcaggaact gggtgtgcac
4861 acggtgttgt agccagttca ggtactgaat atttaggatt tggtgaagtt cactgtattg
4921 ctatattttt gtagataaat aaaactcaat aaattgttaa tcattctctt tttgctgtaa
4981 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaga aaaaaaaaaa
5041 aaaaa
//