LOCUS BC071600 5087 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens RAB12, member RAS oncogene family, mRNA (cDNA clone IMAGE:30344707), complete cds. ACCESSION BC071600 VERSION BC071600.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5087) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5087) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 168 Row: n Column: 12 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 70778967 This clone has the following problem: The cds is short compared to the longest cds in the locus. FEATURES Location/Qualifiers source 1..5087 /db_xref="H-InvDB:HIT000264429" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:30344707" /tissue_type="Placenta, normal" /clone_lib="NIH_MGC_147" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..5087 /gene="RAB12" /db_xref="GeneID:201475" /db_xref="HGNC:HGNC:31332" CDS 292..636 /gene="RAB12" /codon_start=1 /product="RAB12 protein" /protein_id="AAH71600.2" /db_xref="GeneID:201475" /db_xref="HGNC:HGNC:31332" /translation="MDPGAALQRRAGGGGGLGAGSPALSGGQGRRRKQPPRPADFKLQ VIIIGSRGVGKTSLMERFTDDTFCEACKSTVGKGATATLGRASWRPGSCPSPRGLRVS SSLGVFRGWASR" BASE COUNT 1277 a 1082 c 1332 g 1396 t ORIGIN 1 gggatgctgc tgccgctact gcggagtagc tgcttccctt cctcctctcc cggcggcggc 61 ggcggcagcg gcggaggagg aggaggaggg gacccgggcg cagagagccg gccggcggcg 121 cagttgcagc gcggagccca cgggccgccg gggccgctcc agcgggcgga agccgagccc 181 ggggccgacc ccccgcgcgc ggcggaggcc gagggggcgc cggggcccgg ggcgcgcagc 241 cggggggcgg gcggcggcgg gcggcgggcc gagcgggagc cgcatgcgtg tatggatccg 301 ggcgccgcgc tgcagaggcg ggccgggggc ggcggcggtc tgggcgcggg ctccccggcg 361 ctgtcgggcg gccagggccg ccggaggaag cagcccccca ggccggccga cttcaagttg 421 caggtcatca ttatcggctc ccgcggcgtg ggcaagacca gcctgatgga gcgcttcacc 481 gacgacacct tctgcgaggc ctgcaagtcc accgtgggta agggcgccac ggcgaccctg 541 ggccgggcct cctggcgccc gggcagttgc ccttcgcccc gtgggcttcg agtctcatcg 601 agcctgggag tctttcgggg atgggcctct cggtgaaact aggggcgggg gtctccttgg 661 agcgccctgc atcccaatcc caaagcctgg cagaggtttt cgtgccgcct ccgggcagac 721 ctgcccttgg cccccggccc tgcctcagag gtcctggcag cccccggggc ctgtgggggc 781 ggctctccac ggaaacttcg gcccttagca tactcgccca agaaaaagct gggttcgagt 841 ggagcgcagg caggcagggg agtgaacgcc taaggccgct ctcgcccggc ccgccaaggc 901 cagcgcgcgc cgtctgctgc gggtgtgatc cctgcgcaac cagggcagtt ttcttatttt 961 gaacccattt tcaagaaatg aagtttaaag tcacctatgg agaatgttaa aactaaaact 1021 acagtaagtt tctcgtgcta gccgtacgta cggggcagag gagcttcagc tgtatttatc 1081 catgacctca aacaacccgg tgactggcgg gcatggggtt gattcctcca gtaccgctgt 1141 tttcggtgag ggacaggagt gaagtaagta caggaacgct ccagggtcaa ggaggaaaac 1201 agccgcggat ctgaaatgga aactgcaggg gaaatttttt taattaagtc atgcttagag 1261 gacttgacat tgagatttct cagttggatg tgggtagcag ttgtttctat ggaaaacccc 1321 ttaaaagatg tccaaactag gagaaccccg ttctttaaaa taaagggcag tcacttccgt 1381 gataggaagt gagagatttc cccaggggcg gtccaagaaa ctgagtagtc aggagatttg 1441 atagaattaa aagcataatt tcatgtaatt ctatttatta atagtgttat aaccagtggt 1501 agttccaagg ctgtcagtac gattttgaga tgacttgatt tgaaattgtc atgtaacaaa 1561 acagtactac atttaaagtg tcttattgga aagtgaaacc tccaattttt gtactgtctt 1621 tcttggtttg ttttcaagaa cttacttccc ttaatgcttt tttggaatag atcattttgg 1681 aaatatttgt gatgtctgta ccatatgttt ttaaaatgtt gtcgttggag acattatatt 1741 aaaatgagta gcataactat acctgtttca aatatccagt cttggatcat gcagagtaca 1801 gggagttgtt aaaccatcaa atgagggtta ggctgttatt ttagtacctg acataaataa 1861 agtagggtta aattccgttt agaattgtca atattttatg gctccgtact tcagtatata 1921 aaaatgaggg ataatagagt tgcactgtgt gatgaagaga aatcaggtac ccataggtgg 1981 gtaactgagg gcttgagtgg atggagggtg agatggatga gcaaaggtgt gctttagaat 2041 gcagaagagg agagaggaag aaggattttc taagcctggc agcagtggag cagcccccca 2101 cctctgggga gggttcctta ggggacttgg gaatggatgc tgcgagacct tgaccgccat 2161 gctaaggaga atggacccga tcctatgggc acctggaacc aaaagactcc ttagtaaggc 2221 attggcacga aaacagtttg gcagagttgc ataggatgtt tgggaataag gaagagctgc 2281 ggaggatgct tgggaataag gaagaaacca ggaggcaagg agaccaagca gtttgtttct 2341 gtgtccctta acaaacatgc acttacccga gcacatactc cctactctga gtgtggttga 2401 atttctgtct tgctcatttt tgtttgcttc acatgtagcc tataatactt agagtactgg 2461 agtactttag tactcagtgc gtgcttctaa ctgtgggatg ttcagagaat gatcatggcc 2521 cctggcctgc tgcagagcgg gaagacactg tgagaacgcc agccagctcc acttcagttt 2581 ctgcttcaga gttgcttttc ccctccactc atcagatcgt ttgttgagca cctactgtgt 2641 gttgggtgtt atgctaccca gtggggattc agtggtaaac aggacatcga ctctgtccag 2701 aagtggatcg gagcttctgg gagctgcgta accgcttgtc agggcagtga cagatgtgta 2761 tgggtatttg ggagcacagt gaaagcgcct ccagtcgagg ctagtgatga ggcctggtca 2821 gagaaggctt cctcgtcatt ggaatgtttg aagataagtt tgttcctcta gttcctttag 2881 aaaaatgcaa attaaatatg gtactgggtg tggtgtagaa ttgtggttgc cttacctgaa 2941 cgcttaccat ttgagcagtt agctcccggg gttcttccca ggctggtttt tctagtttca 3001 tcttcatgta gtgcagtgaa ttccatatag agcaagagtc tcttccacag taggagtttc 3061 tccctaccct gtcagggctg ctcgcgacag ccgtctggga aagaccgtga gcctcacagc 3121 atggcccagg gaagagtccc tgagtgtgcc tggaccaaga tgggtcacta gagtggtagt 3181 attgtctaat tcctaggcta ggagagtgtt tccattaaga gcctttttat ttttatttat 3241 ttatttattt ttgagacaga gtcttgctct gtcacccagg ctggagtgca gtggtacgat 3301 catggctcac tgcagcctcg acctgccagg ctcacacaat cttcctgccg cagcctcctg 3361 agtagctggg actgcaggtg cacaccacca agcccttttt tgatttttag tagagacaaa 3421 gtcttgctat gttgtccagg ctggtctcaa actcctagtc tcaagcactt ggcctcccaa 3481 agtgctcaga ttacaggcgt aagccactgc tccttaccag taagtgccct tttaaagtaa 3541 atgggattca cttgaacttt ctataaaaga tccgtagtgg aagtccttag ggatttgaga 3601 tgatgaacta ttatgtaaaa ttataaatga gcaaaatgtt gttttttgta ttgttaatca 3661 aatcagaaac tggtttaaaa gatttacaaa attcacaagg gtatgaaaaa cagaggttgt 3721 atttactgat tggtctgttt aatggaaatt gtctaatgga attgtctcat attttcaaat 3781 gggattttgt tttcatggaa tttaattagt ctgattataa tttacaagtt cttttaaaaa 3841 gtacaggagc agctttttaa agtttgagaa acagaaaaaa gtaattgact aaagaaattt 3901 acaactaaca tgcctggtcc actattttcc tcatagcagt gcctgtatca caagcatact 3961 tatccaccat gaatctgtgt gtgcttttgc aagttgacat tattgcttcc tgagtgaagc 4021 tgtagaaacc atttctatct agcaatgccg aattcttgat cttggttcct tctgtttgac 4081 tctcattagt tttagcataa acaggtaaat gtgctttttt aaaagtatat ttcaaaaaac 4141 aactccataa aattacatat ctgtcaatct ttgttttatt tctatgttac tgttggaagc 4201 tagctgttaa ttttgtttag gttgaaatgg ttttaccttt taaaaaccta cccccgccct 4261 tgctccaaca gcattgcatg ctggaaaaaa cactagagta agaataagaa atgtgggttc 4321 ttgctccagg ctctgccact aactagtttg tgactttgga taagtaatgt agttgtctgt 4381 gcctataaat agaagtagta gtagtagtag tagtagtagt agtagtagta gtagtggtca 4441 ctgctatatg gtgagcactt actacaccag cagaaggcct catcacagcc ctgaaagtta 4501 tccccgtttt acagatgagg acgagaagtc tcagagaggt agaaatttac ctgctgtggc 4561 acagctgctc agcaagtggt cagggccaag ggctgcaagt gaattctttt taactatctt 4621 tctgtctgtt ccttagctta ctttcaggtt tagattgact ttgctttgtt gaaaatacta 4681 atggctcaca cacataaagg tcagacatga tggagccctt tcctcgtttt agaatttggt 4741 ccttgttaca gccctgtgaa gatagtgaca taattatcct atggtattag tgaaactgat 4801 tttctttaag tgtgcccctg tcattacttg tcacttgcct tttgaattaa aataatgcta 4861 caagaactgc tttttaatct atatattcca tcattcaaat tcaagtgtct taagcctttt 4921 acataccaaa ataggtatat ttgaatacag gagaagtcaa agaaaggcaa tctggaccag 4981 aattctgatt tttctgggta gtaaagtttc cttcagaatg ctggtggcca gcataggatt 5041 gccagttctt tattttgcca agtaagaaca taaaaaaaaa aaaaaaa //