LOCUS BC071567 5140 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens SNF related kinase, mRNA (cDNA clone MGC:87067
IMAGE:4375623), complete cds.
ACCESSION BC071567
VERSION BC071567.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5140)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5140)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-JUN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: b Column: 13
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31442407.
FEATURES Location/Qualifiers
source 1..5140
/db_xref="H-InvDB:HIT000264396"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87067 IMAGE:4375623"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..5140
/gene="SNRK"
/gene_synonym="FLJ20224"
/gene_synonym="HSNFRK"
/gene_synonym="KIAA0096"
/db_xref="GeneID:54861"
CDS 245..2542
/gene="SNRK"
/gene_synonym="FLJ20224"
/gene_synonym="HSNFRK"
/gene_synonym="KIAA0096"
/codon_start=1
/product="SNRK protein"
/protein_id="AAH71567.1"
/db_xref="GeneID:54861"
/translation="MAGFKRGYDGKIAGLYDLDKTLGRGHFAVVKLARHVFTGEKVAV
KVIDKTKLDTLATGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDMFD
YIMKHEEGLNEDLAKKYFAQIVHAISYCHKLHVVHRDLKPENVVFFEKQGLVKLTDFG
FSNKFQPGKKLTTSCGSLAYSAPEILLGDEYDAPAVDIWSLGVILFMLVCGQPPFQEA
NDSETLTMIMDCKYTVPSHVSKECKDLITRMLQRDPKRRAYLEEIENHPWLQGVDPSP
ATKYNIPLVSYKNLSEEEHNSIIQRMVLGDIADRDAIVEALETNRYNHITATYFLLAE
RILREKQEKEIQTRSASPSNIKAQFRQSWPTKIDVPQDLEDDLTATPLSHATVPQSPA
RAADSVLNGHRSKGLCDSAKKDDLPELAGPALSTVPPASLKPTASGRKCLFRVEEDEE
EDEEDKKPMSLSTQVVLRRKPSVTNRLTSRKSAPVVNQIFEEGESDDEFDMDENLPPK
LSRLKMNIASPGTVHKRYHRRKSQGRGSSCSSSETSDDDSESRRRLDKDSGFTYSWHR
RDSSEGPPGSEGDGGGQSKPSNASGGVDKASPSENNAGGGSPSSGSGGNPTNTSGTTR
RCAGPSNSMQLASRSAGELVESLKLMSLCLGSQLHGSTKYIIDPQNGLSFSSVKVQEK
STWKMCISSTGNAGQVPAVGGIKFFSDHMADTTTELERIRSKNLKNNVLQLPLCEKTI
SVNIQRNPKEGLLCASSPASCCHVI"
BASE COUNT 1472 a 1061 c 1192 g 1415 t
ORIGIN
1 gctgctaccc ggcaccccct ccccgcggcc ggcagcccgc taggtattat gattagcgct
61 gggtgcgggg tttcggcggc cgggagggag ttgtcggcgc cgcggccgct gcggacggac
121 gctcgcctgc cggctgagat atccatgacg acattgaaaa tgaatttttt gtattcacca
181 gatattctta tatgagaaga tctattttaa acagtctaaa tattttttct tctgttggac
241 cagcatggca ggatttaagc gagggtatga tggaaagatt gctgggttat atgatctgga
301 taaaaccttg ggtcgaggcc attttgccgt ggttaaactt gccaggcatg tctttacggg
361 tgaaaaggtg gcagtaaaag ttattgacaa gacaaaactg gacactctag ctactggtca
421 tcttttccag gaagtgagat gcatgaaact agtgcagcat cctaacatcg tccgccttta
481 tgaagttatt gacacccaga ccaaactata tcttattcta gaacttgggg atggaggaga
541 tatgtttgat tatataatga aacatgagga gggtcttaat gaagacttgg ccaagaagta
601 ttttgctcag atagttcatg ctatatctta ttgccataaa ctccatgtgg ttcacagaga
661 cttaaaacca gagaatgtag tcttctttga aaaacaaggt cttgtaaagt tgacagactt
721 tgggttcagc aacaaatttc aaccagggaa gaagctcact acaagctgtg gatctcttgc
781 atattccgct ccagaaattc tgcttggtga tgagtatgat gcacctgcag tagatatttg
841 gagtctggga gtgatccttt tcatgttggt gtgtgggcag ccgccctttc aagaagccaa
901 tgacagtgaa acactgacaa tgatcatgga ttgcaaatat acagtaccat cccatgtgtc
961 taaagagtgt aaagacctaa tcacacggat gctacagaga gatcccaaga gaagggctta
1021 tttagaagag attgaaaatc atccttggct tcagggagtg gacccttcac cagctacaaa
1081 gtataacatt ccccttgtgt catacaaaaa tctctcggaa gaggagcaca acagcatcat
1141 tcagcgcatg gtgcttgggg acatagcgga tcgagacgcc attgtagaag ccctggaaac
1201 caacaggtat aaccatatca cagccacata cttcctgctg gctgaaagga tcctgagaga
1261 aaagcaagag aaagaaatac agaccagatc tgcaagcccg agcaatatca aggcccagtt
1321 taggcagtca tggccaacca aaattgatgt accccaggac cttgaggatg acctcacggc
1381 cactcctttg tcccacgcga ctgtccctca gtctcctgct cgggctgctg acagtgtcct
1441 caatggccac aggagcaaag gcctgtgtga ctcagctaag aaagatgacc tccctgagtt
1501 ggctggacca gcactctcta cggtgccacc cgcaagctta aaacccacag ccagtgggcg
1561 gaagtgtctg ttcagggtgg aagaagatga agaggaagat gaggaggaca agaaacccat
1621 gtccctctca acacaagtgg ttttgcgccg gaagccatct gtaaccaacc gcctgacatc
1681 caggaagagt gcgcccgtcg tcaaccagat ctttgaggaa ggggaatctg acgatgagtt
1741 tgacatggat gagaatctgc ctcccaagtt gagcaggtta aagatgaata tagcttctcc
1801 aggtacagtt cacaaacgct accaccggag gaaaagtcag ggccggggct ccagctgcag
1861 tagttcggag accagtgatg atgattctga aagccggcgg cggctcgata aagatagcgg
1921 gttcacctac tcctggcacc gacgggatag cagcgagggg ccccctggca gtgaggggga
1981 tggcgggggc cagagcaagc caagcaatgc cagtggaggg gtggacaagg ccagccccag
2041 tgagaacaat gctggtgggg gcagtccctc cagcggctcg ggtggcaacc ccaccaatac
2101 atcgggtacc acacgccgct gtgccggccc aagcaactcc atgcagctgg cctctcgcag
2161 tgctggggag ctcgttgaga gcctcaaact catgagcctc tgcctcggct cccagcttca
2221 tgggagcacc aagtacatta ttgatccaca gaatggcttg tcattttcca gtgtgaaagt
2281 ccaagagaaa tctacgtgga aaatgtgcat tagctccaca gggaatgcag ggcaggtccc
2341 tgcagtgggc ggcataaagt ttttctctga ccacatggca gataccacca ctgaattgga
2401 acggataagg agcaagaacc taaaaaataa cgtgctgcag ctacctctgt gcgaaaagac
2461 catctctgtg aacatccagc ggaaccctaa ggaggggctg ctgtgcgcat ccagcccagc
2521 cagctgttgc catgtcatct gactgtggcc ccatctggcc gctagcacgc ttcctgctca
2581 gagcagtgaa gaccggctca cttcactgtt caatttggtt ttactatttt aaagtgggcg
2641 ttaggagcaa ttatttatta cctttccatt tgttagcctg atgatgtgac aatgcatggt
2701 ctttgtgcat gctgctagac acttttcttt cccagccgaa aagcctatta tgtaattttt
2761 acattcataa ttttaatgtg gatgatcagg attaaatcaa gatatatatc tggaacctct
2821 tataaatgga gcacttagaa atttgttgtt ctgcacttaa cctagagaga gaaaaaatgc
2881 tttttctttg tgaaaaatct gaattcctgt cctgaccttc tgtgatgtgg aaaccctagg
2941 ctctgagaca cactctctgg tgtctgagac agaaccaaag caataacgtt gtgatgccca
3001 caggcctgga gccagctagc gaccttgtgc cgcccagctg tccatggccc gtgcagagca
3061 gaggacagtg agtgtctgca ctgagaacct taaaccacag ttgaacatac ccacacctgt
3121 ttgtcttaag ctatagtgta aaaacaaagt ttgggttctg aaaatttaac tgaaaaagat
3181 ttccttgttt ttgtaatagg tgagataaag tacttagatt tataaggcag cttcccctgt
3241 agtgataaat tacaagcaga caatcttatt ttgtaatgtg atgaagtgat gatgtcttaa
3301 ctctacttag agagtgtatg tctgtctaac agaacaaaaa gatgctctgt gtaaattcct
3361 tcctgtaggg cacactgcag gatttccatg tagatagaag aactataggg cctagtacag
3421 aaggtgcaca caaatgttgg caaagtcaaa accccatgaa ttaaaaccta ctggaatttg
3481 gtttttagga gtttggtaat tagattatct cttttgttat tttcattcag ttatatcctt
3541 tggctcagct agctttgaaa ttggctgatg aaaaaatata cataaaaggg taaaattcac
3601 acatacagca aacaaaaatg cacaaagcct gcttcgtaac ttttttttct ggaattgttt
3661 ttcactttgc ctttttctgc caaaacaata atcaaagaac tcttgcttta acctattcct
3721 gtacaaagac tgtttttgac cagataatca tctgttgtgg cattctatct tgtaggacac
3781 tgtatattgc aaattgctga ttatggaagg ggccagttgc tgttttttca tgcagtgccc
3841 tgggagtctt aaaagcagtg cttagcaaca ttggtgatag catgtggctg ggacccaggg
3901 cccttcccca ctcttcagcc ccgagtcatg tgtctgaggt gacggactga gacgcatctg
3961 gtcctgtaat tcagagagtg ggcacatcac caaagaactg cattgctgtg gtcactgttt
4021 cttcaagtac acactgactc tgctacttta ggataaatat attttactca gaactctgaa
4081 tttcacagta tacttactaa actaagtaaa aatgatactt aaaatactta ttttactttc
4141 tagacctagg ctagatgttt taagctacag ctctagttca ttgtgatatt tataatttga
4201 aagctatgag aatagatgtg tgggtgaagc catagaacat atttgcttga aattcttgag
4261 cagggatctt ataaagggcc agaaataaga tgtgtggttc acatagatag tgagcgtaac
4321 atctgtatta aacataggag agaagtttat aaagggcatt ggcaataaac tctttgttgc
4381 agctgttttc caagcagtgt aaatactttt tcctgtgatt atgtatagcc ttggaatggc
4441 accttttaac taacccatat gtgtttggtt tcaatggttt tttatattca gatgtatata
4501 tggtgctcac tttaggatca gcagtgttga ccatttatgc tgcatagctg tattatagcc
4561 ttattagttg tgtggttgac ccttggggta tacaaatgtc agtctgagtg gtgtcttact
4621 cctttgttta taagtgaatg attgtgcatg ttttgtatgt catagtatgt cgtcacataa
4681 aagggaggga gcgaaaaacc attacattaa gataatattg gaccaaacta cttacttgct
4741 ctaaacagtt acttgtaccc cttaacctgt cttcaaaagt tgcatatagt tacagtagtg
4801 tataaattaa atattgtgga aaaacagtct tgtatttttc tgtatgtgtg tatatatata
4861 taattatgta cttctggcaa ttctatctgt atttaaagat gtgacaatct tgacaccaat
4921 tttaagaata gctgtgagac cgaattaaag ataatcccta ccaagtgaaa attgatgtgt
4981 gttaagaggg tacagaatta tcaactgatt tggtcagttg cttccaatgc tggttgattt
5041 ccctcattgt gtaaacattg acaggtatgt gacaaatggg aaaaaaaatc caaataataa
5101 agtgacatat tggtgttcag caataaaaaa aaaaaaaaaa
//