LOCUS BC070343 1456 bp mRNA linear HUM 11-MAY-2004 DEFINITION Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone MGC:88348 IMAGE:30350378), complete cds. ACCESSION BC070343 VERSION BC070343.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1456) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1456) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Michael Brownstein and Dr. Miklos Palkovits cDNA Library Preparation: CLONTECH Laboratories, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 57 Row: o Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: Hexamer frequency ORF analysis, Similarity but not identity to protein. FEATURES Location/Qualifiers source 1..1456 /db_xref="H-InvDB:HIT000264298" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:88348 IMAGE:30350378" /tissue_type="Glandular pool- thyroid, parathyroid, adrenal cortex, pineal gland, submandibular gland." /clone_lib="NIH_MGC_184" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1456 /gene="TRA@" /gene_synonym="TCRA" /gene_synonym="TRA" /db_xref="GeneID:6955" /db_xref="MIM:186880" CDS 60..881 /gene="TRA@" /gene_synonym="TCRA" /gene_synonym="TRA" /codon_start=1 /product="TRA@ protein" /protein_id="AAH70343.1" /db_xref="GeneID:6955" /db_xref="MIM:186880" /translation="MKSLRVLLVILWLQLSWVWSQQKEVEQDPGPLSVPEGAIVSLNC TYSNSAFQYFMWYRQYSRKGPELLMYTYSSGNKEDGRFTAQVDKSSKYISLFIRDSQP SDSATYLCAMSARTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKSVCLFTDF DSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDT FFPSPESSCDVKLVEKSFETDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSS" BASE COUNT 382 a 364 c 326 g 384 t ORIGIN 1 attatttttt tttcgtgttt aaggtttgaa tcctcagtga accagggcag aaaagaatga 61 tgaaatcctt gagagtttta ctggtgatcc tgtggcttca gttaagctgg gtttggagcc 121 aacagaagga ggtggagcag gatcctggac cactcagtgt tccagaggga gccattgttt 181 ctctcaactg cacttacagc aacagtgctt ttcaatactt catgtggtac agacagtatt 241 ccagaaaagg ccctgagttg ctgatgtaca catactccag tggtaacaaa gaagatggaa 301 ggtttacagc acaggtcgat aaatccagca agtatatctc cttgttcatc agagactcac 361 agcccagtga ttcagccacc tacctctgtg caatgagcgc gcggaccggt aaccagttct 421 attttgggac agggacaagt ttgacggtca ttccaaatat ccagaaccct gaccctgccg 481 tgtaccagct gagagactct aaatccagtg acaagtctgt ctgcctattc accgattttg 541 attctcaaac aaatgtgtca caaagtaagg attctgatgt gtatatcaca gacaaaactg 601 tgctagacat gaggtctatg gacttcaaga gcaacagtgc tgtggcctgg agcaacaaat 661 ctgactttgc atgtgcaaac gccttcaaca acagcattat tccagaagac accttcttcc 721 ccagcccaga aagttcctgt gatgtcaagc tggtcgagaa aagctttgaa acagatacga 781 acctaaactt tcaaaacctg tcagtgattg ggttccgaat cctcctcctg aaagtggccg 841 ggtttaatct gctcatgacg ctgcggctgt ggtccagctg agatctgcaa gattgtaaga 901 cagcctgtgc tccctcgctc cttcctctgc attgcccctc ttctccctct ccaaacagag 961 ggaactctcc tacccccaag gaggtgaaag ctgctaccac ctctgtgccc ccccggcaat 1021 gccaccaact ggatcctacc cgaatttatg attaagattg ctgaagagct gccaaacact 1081 gctgccaccc cctctgttcc cttattgctg cttgtcactg cctgacattc acggcagagg 1141 caaggctgct gcagcctccc ctggctgtgc acattccctc ctgctcccca gagactgcct 1201 ccgccatccc acagatgatg gatcttcagt gggttctctt gggctctagg tcccggagaa 1261 tgttgtgagg ggtttatttt tttttaatag tgttcataaa gaaagacata gtattcttct 1321 tctcaagacg tggggggaaa ttatctcatt atcgaggccc tgctatgctg tgtgtctggg 1381 cgtgttgtat gtcctgctgc cgatgccttc attaaaatga tttggaagag caaaaaaaaa 1441 aaaaaaaaaa aaaaaa //