LOCUS BC070309 597 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens chemokine (C motif) ligand 1, mRNA (cDNA clone
MGC:88311 IMAGE:30416260), complete cds.
ACCESSION BC070309
VERSION BC070309.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 597)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 597)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Narayan Bhat
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: p Column: 15
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4506852.
FEATURES Location/Qualifiers
source 1..597
/db_xref="H-InvDB:HIT000264267"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88311 IMAGE:30416260"
/tissue_type="Blood, peripheral blood mononuclear cells
(PBMC) cytoplasmic poly A RNA is pooled sample from 3 and
6 hr after stimulation with PMA and Ionomycin. These
reagents are used to activate T- cells that results in
lymphokine and cytokine production."
/clone_lib="NIH_MGC_191"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..597
/gene="XCL1"
/gene_synonym="ATAC"
/gene_synonym="LPTN"
/gene_synonym="SCM-1"
/gene_synonym="SCM-1a"
/gene_synonym="SCM1"
/db_xref="GeneID:6375"
/db_xref="HGNC:HGNC:10645"
/db_xref="MIM:600250"
CDS 34..378
/gene="XCL1"
/gene_synonym="ATAC"
/gene_synonym="LPTN"
/gene_synonym="SCM-1"
/gene_synonym="SCM-1a"
/gene_synonym="SCM1"
/codon_start=1
/product="chemokine (C motif) ligand 1"
/protein_id="AAH70309.1"
/db_xref="GeneID:6375"
/db_xref="HGNC:HGNC:10645"
/db_xref="MIM:600250"
/translation="MRLLILALLGICSLTAYIVEGVGSEVSDKRTCVSLTTQRLPVSR
IKTYTITEGSLRAVIFITKRGLKVCADPQATWVRDVVRSMDRKSNTRNNMIQTKPTGT
QQSTNTAVTLTG"
BASE COUNT 189 a 145 c 111 g 152 t
ORIGIN
1 actctccctg cacagctcag caggacctca gccatgagac ttctcatcct ggccctcctt
61 ggcatctgct ctctcactgc atacattgtg gaaggtgtag ggagtgaagt ctcagataag
121 aggacctgtg tgagcctcac tacccagcga ctgccggtta gcagaatcaa gacctacacc
181 atcacggaag gctccttgag agcagtaatt tttattacca aacgtggcct aaaagtctgt
241 gctgatccac aagccacatg ggtgagagac gtggtcagga gcatggacag gaaatccaac
301 accagaaata acatgatcca gaccaagcca acaggaaccc agcaatcgac caatacagct
361 gtgactctga ctggctagta gtctctggca ccctgtccgt ctccagccag ccagctcatt
421 tcactttaca cgctcatgga ctgagtttat actcaccttt tatgaaagca ctgcatgaat
481 aaaattattc ctttgtattt ttacttttaa atgtcttctg tattcactta tatgttctaa
541 ttaataaatt atttattatt aagaatcaaa aaaaaaaaaa aaaaaaaaaa aaaaaaa
//