LOCUS BC070233 1438 bp mRNA linear HUM 06-JAN-2006
DEFINITION Homo sapiens homeobox B13, mRNA (cDNA clone MGC:88215
IMAGE:6668163), complete cds.
ACCESSION BC070233
VERSION BC070233.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1438)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1438)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: l Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 70167332.
FEATURES Location/Qualifiers
source 1..1438
/db_xref="H-InvDB:HIT000264191"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88215 IMAGE:6668163"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1438
/gene="HOXB13"
/gene_synonym="PSGD"
/db_xref="GeneID:10481"
/db_xref="HGNC:HGNC:5112"
/db_xref="IMGT/GENE-DB:5112"
/db_xref="MIM:604607"
CDS 92..946
/gene="HOXB13"
/gene_synonym="PSGD"
/codon_start=1
/product="HOXB13 protein"
/protein_id="AAH70233.1"
/db_xref="GeneID:10481"
/db_xref="HGNC:HGNC:5112"
/db_xref="IMGT/GENE-DB:5112"
/db_xref="MIM:604607"
/translation="MEPGNYATLDGAKDIEGLLGAGGGRNLVAHSPLTSHPAAPTLMP
AVNYAPLDLPGSAEPPKQCHPCPGVPQGTSPAPVPYGYFGGGYYSCRVSRSSLKPCAQ
AATLAAYPAETPTAGEEYPSRPTEFAFYPGYPGTYQPMASYLDVSVVQTLGAPGEPRH
DSLLPVDSYQSWALAGGWNSQMCCQGEQNPPGPFWKAAFADSSGQHPPDACAFRRGRK
KRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLA
KVKNSATP"
BASE COUNT 366 a 420 c 395 g 257 t
ORIGIN
1 gctttggatt cccccggcct gggtggggag agcgagctgg gtgcccccta gattccccgc
61 ccccgcacct catgagccga ccctcggctc catggagccc ggcaattatg ccaccttgga
121 tggagccaag gatatcgaag gcttgctggg agcgggaggg gggcggaatc tggtcgccca
181 ctcccctctg accagccacc cagcggcgcc tacgctgatg cctgctgtca actatgcccc
241 cttggatctg ccaggctcgg cggagccgcc aaagcaatgc cacccatgcc ctggggtgcc
301 ccaggggacg tccccagctc ccgtgcctta tggttacttt ggaggcgggt actactcctg
361 ccgagtgtcc cggagctcgc tgaaaccctg tgcccaggca gccaccctgg ccgcgtaccc
421 cgcggagact cccacggccg gggaagagta ccccagccgc cccactgagt ttgccttcta
481 tccgggatat ccgggaacct accagcctat ggccagttac ctggacgtgt ctgtggtgca
541 gactctgggt gctcctggag aaccgcgaca tgactccctg ttgcctgtgg acagttacca
601 gtcttgggct ctcgctggtg gctggaacag ccagatgtgt tgccagggag aacagaaccc
661 accaggtccc ttttggaagg cagcatttgc agactccagc gggcagcacc ctcctgacgc
721 ctgcgccttt cgtcgcggcc gcaagaaacg cattccgtac agcaaggggc agttgcggga
781 gctggagcgg gagtatgcgg ctaacaagtt catcaccaag gacaagaggc gcaagatctc
841 ggcagccacc agcctctcgg agcgccagat taccatctgg tttcagaacc gccgggtcaa
901 agagaagaag gttctcgcca aggtgaagaa cagcgctacc ccttaagaga tctccttgcc
961 tgggtgggag gagcgaaagt gggggtgtcc tggggagacc aggaacctgc caagcccagg
1021 ctggggccaa ggactctgct gagaggcccc tagagacaac acccttccca ggccactggc
1081 tgctggactg ttcctcagga gcggcctggg tacccagtat gtgcagggag acggaacccc
1141 atgtgacagc ccactccacc agggttccca aagaacctgg cccagtcata atcattcatc
1201 ctgacagtgg caataatcac gataaccagt actagctgcc atgatcgtta gcctcatatt
1261 ttctatctag agctctgtag agcactttag aaaccgcttt catgaattga gctaattatg
1321 aataaatttg gaaggcgatc cctttgcagg gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1381 aaaaaaaaaa aaaaaaaaaa aaaaaaaacc aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//