LOCUS BC070203 1904 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens collagen, type IV, alpha 6, mRNA (cDNA clone
IMAGE:4274195), complete cds.
ACCESSION BC070203
VERSION BC070203.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1904)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1904)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CLONTECH
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: b Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16357502
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1904
/db_xref="H-InvDB:HIT000264161"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4274195"
/tissue_type="Prostate"
/clone_lib="NIH_MGC_83"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1904
/gene="COL4A6"
/db_xref="GeneID:1288"
/db_xref="MIM:303631"
CDS 220..438
/gene="COL4A6"
/codon_start=1
/product="COL4A6 protein"
/protein_id="AAH70203.1"
/db_xref="GeneID:1288"
/db_xref="MIM:303631"
/translation="MHPGLWLLLVTLCLTEELAAAGEKSYGKPCGGQDCSGSCQCFPE
KGARHNLQLLNDMAGRLYHFSEVLPNLF"
BASE COUNT 580 a 362 c 440 g 522 t
ORIGIN
1 gagtgctgca agttgtaacg ggcaccgctg agcctgtttc cctttggagc acttcttatc
61 tagaagcagt gtttagtttc ttccaaactg ggccacttcg tccacctact ctgttctgag
121 taaggaaaca gcctccaagc atcagcagag cccagatgag cacgggccgc ggagccgctt
181 agcagtctcc cgggacccag ctccggagga gccgcaagca tgcaccctgg gttgtggctg
241 ctcctggtta cgttgtgcct gaccgaggaa ctggcagcag cgggagagaa gtcttatgga
301 aagccatgtg ggggccagga ctgcagtggg agctgtcagt gttttcctga gaaaggagcg
361 agacacaact tgcagctact gaatgatatg gctggccggc tctaccattt cagtgaggtt
421 ctgcctaatc tcttttgatt ctaaggggta atgtggctca gccacagcaa ggaggctgag
481 ttctgatgtt ctctttcccc atacttctat ggaagactgg aagacagatt acttgcagtg
541 atttctggag gcagaagata agcaagtggc ctctatgatg gtagaaccaa gaaagaatga
601 tcattgccct taagccttca gagatgacag ctaaatccag agggaaaata aatagggata
661 agattgtaaa aaaagttgct gctggagaaa aaatagctgc tgctgataaa gaacctcaat
721 aaattcaaac aatgtctgcg tttggccctc aaatgtcatg ctggctcatt gctcgggaga
781 aagagccgta caactaccat gtcagaggag atgaggaagc aaagaagtct gactaagggc
841 actgccatgg atattcttgc ccctgctttg gaacaatcta tcattggatt gtggagagga
901 agcaaggagg cagctggcag tgtgacacca cgtgctatga ctcatgactg ttttgcctga
961 tggttggcaa catagtattg gcacagttgt gggctctaga gtacctgggc ctgaatctct
1021 attgatatgt gccatttggc aaatttctaa actctaagtc ttagctgtct catatacaaa
1081 atgggcataa tacatcctcc ctcatatggt tgttgtgagg attaataaaa cagtgtttat
1141 aaagtgcttg gcacagtgct gaacacatag cagtaaataa atattagtca ttattaatat
1201 tagctgatgc acatttgggg gcaatttcaa gaaagaattg attacaatag taaattcaga
1261 ctatggcatc tattgattgt tcctttttaa atgaaccatt ttaaatacag taaaaaccct
1321 cctccctggc ctctgcttaa cttcctttat ggagtaagtc gatgtttttc cttcctattg
1381 gaatatacac tggccaatgc tcagggcaca atggaagctc atgggcaggt aagttacttc
1441 tggtgaacac ttatatttct gcttccacac aacaagttga tcacttacca aaagttagct
1501 gtgtttttgc caagcccatt tatggcagtt gtactcgtta ttacaagtag gtaatttaat
1561 gtaaatttgt gaaatatgag tataaaaaga aaactgttat tttcatgaaa actaagttca
1621 atgctttgga aagacttact aaagaaaagt tgcttttgaa aactgccata ttgttaaaaa
1681 taaaacaaaa ctgaaagtgg aaatcaaatg tgatgcatta ggaatgtaac ttatgtgaaa
1741 aagagtctgt gaaatcccag ggtgtggcct cacgctcaaa gaaaaggcct tggccttaca
1801 acacatcacc agagtggtga atgaatgtac tttgtgtgtt ttaggttgaa ataaaatgtt
1861 ttatgtatgt atacaaaaaa aaaaaaaaaa aaaaaaaaaa aaaa
//