LOCUS BC070155 1305 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens chromosome 17 open reading frame 48, mRNA (cDNA clone
MGC:88135 IMAGE:4656998), complete cds.
ACCESSION BC070155
VERSION BC070155.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1305)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1305)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: e Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37059747
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1305
/db_xref="H-InvDB:HIT000264113"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88135 IMAGE:4656998"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_61"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1305
/gene="C17orf48"
/gene_synonym="MDS006"
/gene_synonym="NBLA03831"
/db_xref="GeneID:56985"
/db_xref="HGNC:HGNC:30925"
CDS 71..688
/gene="C17orf48"
/gene_synonym="MDS006"
/gene_synonym="NBLA03831"
/codon_start=1
/product="C17orf48 protein"
/protein_id="AAH70155.1"
/db_xref="GeneID:56985"
/db_xref="HGNC:HGNC:30925"
/translation="MDDKPNPEALSDSSERLFSFGVIADVQFADLEDGFNFQGTRRRY
YRHSLLHLQGAIEDWNNESSMPCCVLQLGDIIDGYNAQYNASKKSLELVMDMFKRLKV
PVHHTWGNHEFYNFSREYLTHSKLNTKFLEDQIVHHPETMPSEDYYAYHFVPFPKFRF
ILLDAYDLSVLGVDQSSPKYEQCMKILREHNPNTELNSPQGELFL"
BASE COUNT 399 a 260 c 274 g 372 t
ORIGIN
1 ggctgttaca tagcccgtag tcagaggcct ttcagcccag gggccggcgc acgaaacctg
61 tttggaggtt atggatgata aacccaatcc tgaagcccta agtgacagtt cagagcgtct
121 tttctccttt ggcgtcatcg cagatgttca atttgcagac ttagaagatg gctttaattt
181 ccaaggaacc aggcggcgat actacagaca tagtcttctt cacttacagg gtgccattga
241 agactggaat aatgaaagca gcatgccctg ttgtgtcctt cagcttggag atatcatcga
301 tggatataat gcacagtata atgcatccaa aaagtcccta gaacttgtta tggacatgtt
361 caagaggctt aaagttccag ttcatcatac atggggaaac catgaattct ataacttcag
421 tagagagtat ttaacacact ctaaacttaa cactaagttt ctagaagatc agattgtaca
481 tcatcctgag accatgcctt cagaagatta ttatgcttat cattttgtac cattccctaa
541 attccggttc attttacttg atgcatatga cttgagtgtc ttgggcgtgg atcagtcttc
601 tccaaaatac gagcagtgta tgaagatatt gagggagcac aatccaaata cggaactgaa
661 tagtcctcaa ggtgaattat tcctttgagc tgagaatcta atagattgtc tttaaattct
721 tcagctacct tttattcagc aggaagatgg acaattaagg actttctgag ccccagtttg
781 tccagtttaa tggaggattc agccaagaac agctaaactg gttgaatgaa gtgctaacat
841 tctctgacac aaaccaagaa aaggtggtga ttgtgagcca tcttcccatt tacccggacg
901 cctctgacaa tgtgtgcctg gcctggaact acagagatgc cctggcagtc atttggtctc
961 atgagtgtgt ggtgtgtttc tttgctggtc acacccatga tggtggctac tctgaggatc
1021 cttttggtgt ataccacgtc aacctagaag gagttattga aacagctcca gacagccaag
1081 cctttggcac agttcatgtc tatcctgaca aaatgatgtt gaaagggaga ggcagagttc
1141 cagatagaat tatgaattac aagaaagaaa gagccttcca ttgttagtct aatttatttt
1201 aacttgatag aaaatgagct ttgtgtttgt ccctcctaaa caaaaaaata aaaatcctct
1261 gtctcattgt ttagcaaaaa aaaaaaaaaa aaaaaaaaaa aaaaa
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