LOCUS BC070133 1927 bp mRNA linear HUM 15-JUL-2006 DEFINITION Homo sapiens nucleoporin 50kDa, mRNA (cDNA clone MGC:88113 IMAGE:6463796), complete cds. ACCESSION BC070133 VERSION BC070133.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1927) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1927) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: NCI cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 57 Row: j Column: 19 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 24497450. FEATURES Location/Qualifiers source 1..1927 /db_xref="H-InvDB:HIT000264091" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:88113 IMAGE:6463796" /tissue_type="Pooled, 40 cell lines" /clone_lib="NIH_MGC_142" /lab_host="DH10B" /note="Vector: pDNR-LIB" gene 1..1927 /gene="NUP50" /gene_synonym="MGC39961" /gene_synonym="NPAP60" /db_xref="GeneID:10762" /db_xref="HGNC:HGNC:8065" /db_xref="MIM:604646" CDS 323..1729 /gene="NUP50" /gene_synonym="MGC39961" /gene_synonym="NPAP60" /codon_start=1 /product="nucleoporin 50kDa" /protein_id="AAH70133.1" /db_xref="GeneID:10762" /db_xref="HGNC:HGNC:8065" /db_xref="MIM:604646" /translation="MAKRNAEKELTDRNWDQEDEAEEVGTFSMASEEVLKNRAIKKAK RRNVGFESDTGGAFKGFKGLVVPSGGGRFSGFGSGAGGKPLEGLSNGNNITSAPPFAS AKAAADPKVAFGSLAANGPTTLVDKVSNPKTNGDSQQPSSSGLASSKACVGNAYHKQL AALNCSVRDWIVKHVNTNPLCDLTPIFKDYEKYLANIEQQHGNSGRNSESESNKVAAE TQSPSLFGSTKLQQESTFLFHGNKTEDTPDKKMEVASEKKTDPSSLGATSASFNFGKK VDSSVLGSLSSVPLTGFSFSPGNSSLFGKDTTQSKPVSSPFPTKPLEGQAEGDSGECK GGDEEENDEPPKVVVTEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTANQKTQ LLVRADTNLGNILLNVLIPPNMPCTRTGKNNVLIVCVPNPPIDEKNATMPVTMLIRVK TSEDADELHKILLEKKDA" BASE COUNT 576 a 443 c 470 g 438 t ORIGIN 1 gtttttgggg gtagattcga gttacaaaat ggccgcccgg agcgtgttcg gcgcggttcc 61 cccagctgtc tctggctgaa ccggcgctct cgcctccctg ccgaacacag cgtgaggagc 121 ccccccaggg atatggtgtt tgagtctctg ggcttgccga gcactaagtc ctctgagttc 181 cgcagcgcag caccggaagc ggccgagcgc gctcagcccg gcgacccctg cgggctccag 241 acccctgcgc cgctgcgccc cgggtttcgc cgcaaccaag acccagcgag tgcagcggcg 301 gccgccgagg aggttcgaaa acatggccaa aagaaatgcc gagaaggaac tgacagatag 361 gaattgggat caagaagatg aagctgaaga ggtgggaaca ttctccatgg ccagtgagga 421 agtcttgaag aatagagcca taaagaaagc aaagcgcaga aatgttggat ttgaatctga 481 cactggagga gcctttaaag gttttaaagg tttggtggta ccttctggag gaggacgctt 541 ttctggattt ggtagtggcg ctggagggaa gcctttggaa ggactgtcga atggaaacaa 601 cataaccagt gcccctccct tcgccagtgc aaaggcagcg gcagatccca aggtagcctt 661 tggttctctt gctgcaaatg gccctaccac cttggttgat aaagtttcaa atcccaaaac 721 taatggggac agtcagcagc cctcctcctc tggccttgct tccagtaaag cttgtgtcgg 781 aaatgcctat cacaagcagt tggccgcctt gaactgctcc gtgcgggatt ggatagtgaa 841 gcacgtgaat acaaaccccc tctgtgatct gacacctatc tttaaagact atgagaaata 901 tttagcaaac attgaacagc aacacgggaa cagtggcagg aattctgaaa gtgaatctaa 961 caaagtggca gctgaaacac agtctccttc cctttttggc tcaacaaaat tacagcaaga 1021 gtcaacgttt ttgtttcatg gcaacaaaac tgaagataca cctgacaaga agatggaggt 1081 ggcatctgaa aagaaaacgg acccatcatc actaggagcg acaagtgcct catttaattt 1141 cggcaagaaa gttgatagct ctgttttggg ctcattaagc tctgtccccc tgactggatt 1201 ttctttctcc cctggaaact ccagtttatt tggcaaagat actacccaga gtaaaccagt 1261 ctcttcacca tttcccacta aaccattgga gggccaagca gaaggtgaca gtggtgaatg 1321 caaaggtgga gatgaagaag agaatgatga gccacccaaa gtagtagtta ccgaagtaaa 1381 agaagaagat gctttttact ccaaaaagtg taaactgttt tacaagaaag acaatgagtt 1441 taaagagaaa ggcataggta ctctgcattt aaaacctaca gcaaatcaga agacacagct 1501 tttggtgcgg gcagacacca atttaggcaa catattgctg aacgttctga ttccacccaa 1561 tatgccatgt acgcgaacag ggaagaataa cgttcttatc gtctgtgttc caaatccacc 1621 aattgacgag aagaatgcca ccatgccagt caccatgttg attcgggtaa aaaccagcga 1681 ggatgcagac gagttgcaca aaattttact ggagaaaaag gatgcctgaa cacgcaaagt 1741 cggctgcaga attattgcca agttgctgct gcttccaccg ccccttaaag ttagtcagtt 1801 tttcttctct tctttgacat tctaagaact tatagataac ttaaaacttt tgtgaggaag 1861 attaatgtgg ccaataaaac ctttaaatgt taagtgccaa aaaaaaaaaa aaaaaaaaaa 1921 aaaaaaa //