LOCUS BC070035 4387 bp mRNA linear HUM 28-JUL-2005 DEFINITION Homo sapiens nuclear receptor subfamily 1, group D, member 2, mRNA (cDNA clone MGC:87005 IMAGE:4373827), complete cds. ACCESSION BC070035 VERSION BC070035.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4387) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 4387) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 167 Row: a Column: 4 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254809. FEATURES Location/Qualifiers source 1..4387 /db_xref="H-InvDB:HIT000263993" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87005 IMAGE:4373827" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..4387 /gene="NR1D2" /gene_synonym="BD73" /gene_synonym="EAR-1r" /gene_synonym="Hs.37288" /gene_synonym="HZF2" /gene_synonym="RVR" /db_xref="GeneID:9975" /db_xref="MIM:602304" CDS 207..1433 /gene="NR1D2" /gene_synonym="BD73" /gene_synonym="EAR-1r" /gene_synonym="Hs.37288" /gene_synonym="HZF2" /gene_synonym="RVR" /codon_start=1 /product="NR1D2 protein" /protein_id="AAH70035.1" /db_xref="GeneID:9975" /db_xref="MIM:602304" /translation="MEVNAGGVIAYISSSSSASSPASCHSEGSENSFQSSSSSVPSSP NSSNSDTNGNPKNGDLANIEGILKNDRIDCSMKTSKSSAPGMTKSHSGVTKFSGMVLL CKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCR FKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDTLVEHHEQ TALPAQEQLRPKPQLEQENIKSSSPPSSDFAKEEVIGMVTRAHKDTFMYNQEQQENSA ESMQPQRGERIPKNMEQYNLNHDHCGNGLSSHFPCSESQQHLNGQFKGRNIMHYPNGH AICIANGHCMNFSNAYTQRVCDRVPIDGFSQNENKNSYLCNTGGRMHLYSVHIQPKFH QKQQYHTISSLNHEVL" BASE COUNT 1336 a 800 c 898 g 1353 t ORIGIN 1 ggtcgccggc cgccgccacc ctctctcgct gcagcctgct gtgcgctgca cggcctgggg 61 cccgggagcc ccgcccgctc tgcccatgag ggggccccgc gaccaccgct gcttccagcc 121 cggggcggcg cggcgctgag gcggcggcgg cggcgctgcc ccctctgcgg gaagcgggcg 181 gccccggccg cctccgcgag ggcaccatgg aggtgaatgc aggaggtgtg attgcctata 241 tcagttcttc cagctcagcc tcaagccctg cctcttgtca cagtgagggt tctgagaata 301 gtttccagtc ctcctcctct tctgttccat cttctccaaa tagctctaat tctgatacca 361 atggtaatcc caagaatggt gatctcgcca atattgaagg catcttgaag aatgatcgaa 421 tagattgttc tatgaaaaca agcaaatcga gtgcacctgg gatgacaaaa agtcatagtg 481 gtgtgacaaa atttagtggc atggttctac tgtgtaaagt ctgtggggat gtggcgtcag 541 gattccacta tggagttcat gcttgcgaag gctgtaaggg tttctttcgg agaagtattc 601 aacaaaacat ccagtacaag aagtgcctga agaatgaaaa ctgttctata atgagaatga 661 ataggaacag atgtcagcaa tgtcgcttca aaaagtgtct gtctgttgga atgtcaagag 721 atgctgttcg gtttggtcgt attcctaagc gtgaaaaaca gaggatgcta attgaaatgc 781 aaagtgcaat gaagaccatg atgaacagcc agttcagtgg tcacttgcaa aatgacacat 841 tagtagaaca tcatgaacag acagccttgc cagcccagga acagctgcga cccaagcccc 901 aactggagca agaaaacatc aaaagctctt ctcctccatc ttctgatttt gcaaaggaag 961 aagtgattgg catggtgacc agagctcaca aggatacctt tatgtataat caagagcagc 1021 aagaaaactc agctgagagc atgcagcccc agagaggaga acggattccc aagaacatgg 1081 agcaatataa tttaaatcat gatcattgcg gcaatgggct tagcagccat tttccctgta 1141 gtgagagcca gcagcatctc aatggacagt tcaaagggag gaatataatg cattacccaa 1201 atggtcatgc catttgtatt gcaaatggac attgtatgaa cttctccaat gcttatactc 1261 aaagagtatg tgatagagtt ccgatagatg gattttctca gaatgagaac aagaatagtt 1321 acctgtgcaa cactggagga agaatgcatc tgtacagtgt tcatattcag ccaaaatttc 1381 accaaaaaca gcagtaccac accatttcca gtttaaacca tgaagtcctt tgatagtgct 1441 tggtattttc tactgacagg tttgtccaat gagtaagtct ccatatgtgg atcctcataa 1501 atcaggacat gaaatctggg aagaattttc gatgagcttc actccagcag tgaaagaagt 1561 ggtggaattt gcaaagcgta ttcctgggtt cagagatctc tctcagcatg accaggtcaa 1621 ccttttaaag gctgggactt ttgaggtttt aatggtacgg ttcgcatcat tatttgatgc 1681 aaaggaacgt actgtcacct ttttaagtgg aaagaaatat agtgtggatg atttacactc 1741 aatgggagca ggggatctgc taaactctat gtttgaattt agtgagaagc taaatgccct 1801 ccaacttagt gatggagaga tgagtttgtt tacagctgtt gtcctggtat ctgcagatcg 1861 atctggaata gaaaacgtca actctgtgga ggctttgcag gaaactctca ttcgtgcact 1921 aaggacctta ataatgaaaa accatccaaa tgaggcctct atttttacaa aactgcttct 1981 aaagttgcca gatcttcgat ctttaaacaa catgcactct gaggagctct tggcctttaa 2041 agttcaccct taaggccttt gtttatttaa acatgaactg atggtaactg tacattttgt 2101 gctaaaatgc atatttatat gtgtatacca tatgtggaga tagaaaagac ctttaagaca 2161 ataaaagatt gtaggctatc tctgtaatca tgcaatagct gttcggattg agaactctcc 2221 agccatgatt agacgttgac tgcatctccc tgatagacca atcagctgtg tcgcacttaa 2281 actggagaag ttacactgaa gtataatcac actgaatgtt agactttttc atctgccaaa 2341 accaaaaacc attttgatct ccctgtggtt atcaatataa cgcacaatca caagtgtatg 2401 aggacttaga aattaatcct ttgtggtagg agttctgttg aatgatggaa atcttattac 2461 taccacaaga ctatttgatc tggtaattgg agacttcggg atttaggaga tctccatgtc 2521 tgtatttact ctaccactgc taaagtgtgt ggtcctgggt agtttacttg cttgcggaaa 2581 atgagaattg atggtgtccc caatgcccca cctcacagag ttactaaaaa atgtctgtaa 2641 agcatattta cctcttggga gataggcact atgtaaataa ggtaaaattt ctgttattac 2701 aattattcat aataatattc ttttcttatt tctaagcctt tctgggaaat catttcagtc 2761 cacaccaacc atattattca gggttcctgc catatgtgtg gggtatccta ctgatacaca 2821 cgtattcaaa gtttatgggt acaacaaaga catagtacat gtacataata tgtatgtgaa 2881 tatagttaaa tatatttctt cacaatattt taaactgtga agaactttat catacaggaa 2941 acttaaaaca agaggtgtca aaagacccaa attaggtgca ttttacttgt ttatgatggc 3001 ataaccattg ctttaaaatg tttagacagt agaatattga atttatgctc tatttttgtt 3061 tatttaagca acacttaatg taaaagtgca acaggcaatt gaatccaaat ttcaacgaca 3121 aaaaaaaaac gtgtatttta gagttcatct ttggcaaaat ctttggttca gggtactagt 3181 tgtttaaaag ttgattcata ttcttacctt gtgctgagaa aggttgcatt gctgcccctt 3241 atacacatgc tgcagcttga tgttaaagaa tttttattct ttctgaagaa ctaattaatg 3301 tttaaagcaa ctgtttaata tgatggcatg tgtgtgtgtg cgtgcgtgtg tatgttctga 3361 gtccacttct tttttcctaa ataacactac agggattttg tcatattaga tttaatttat 3421 aatttgaaaa atcatctagt gtgtgaccta caggcttaga aatggtatag tcaaagacat 3481 tttatccaca tttctaatag tggacttgat taagtagata agatcagcat ctgtttatgg 3541 tagtaggaga aatagccaaa gttgaggatt ttatgtatgt tttcctgttt acctggaaaa 3601 tagcaattaa ttggattttt tggtaaagat tgccttctgt ataatgtttg gattatataa 3661 aattgcaaaa atgataacag cccgctttac tgtactaagc ctgttacttt catgacgtgt 3721 gagcagaatg ccttattttg taatcttgtt taacttgttg ctactgggac ttgatttact 3781 gtggcactag ttaagtaagt taaaaaaaag ttaaaccctc tcattattaa agaggaaagg 3841 cgatggtgat gtctgtagta caatataaac cataattgtg atttacctta agtaggtata 3901 actcttatgg gatatacagt atagtttttg tgaatcttta catgatagca ttatcttttt 3961 ataatttttt ttcctaagat aaacaaatgc atagttttct tctatgggtg atagaaacag 4021 ctttttgaag taatgagaac ctcaaaagat catgttgatt cttaattttt gccttttgca 4081 taagcctctt tataacatgt atctttaaaa caattaagtc tttaggaatg tgtaaccaga 4141 actatgttag tattgcttat aaaactttag ttaggttcaa tatatacata tatacatctc 4201 tatataggta tatagatttg cattttgtct tgtaaaattt tatttgaata aattcttcct 4261 gtaggtaatg ggaaacaaaa ttaatagttc atatgtcact catagcattt ctatatttga 4321 aagtagccca atataaaact tttgattcta aaattaaacc agcagcctat tacaaaaaaa 4381 aaaaaaa //