LOCUS BC069690 445 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens defensin, alpha 5, Paneth cell-specific, mRNA (cDNA
clone MGC:97237 IMAGE:7262486), complete cds.
ACCESSION BC069690
VERSION BC069690.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 445)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 445)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (29-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Baylor Human Genome Sequencing Center
cDNA Library Preparation: Baylor Human Genome Sequencing Center
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Baylor College of Medicine Human Genome
Sequencing Center
Center code: BCM-HGSC
Web site: http://www.hgsc.bcm.tmc.edu/cdna/
Contact: amg@bcm.tmc.edu
Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H.,
Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati,
A.N., Gibbs, R.A.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRBR Plate: 5 Row: a Column: 12.
FEATURES Location/Qualifiers
source 1..445
/db_xref="H-InvDB:HIT000263841"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:97237 IMAGE:7262486"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_244"
/note="Vector: pPCR-Script Amp SK(+)"
gene 1..445
/gene="DEFA5"
/gene_synonym="HD-5"
/db_xref="GeneID:1670"
/db_xref="HGNC:HGNC:2764"
/db_xref="MIM:600472"
CDS 39..323
/gene="DEFA5"
/gene_synonym="HD-5"
/codon_start=1
/product="defensin, alpha 5, Paneth cell-specific"
/protein_id="AAH69690.1"
/db_xref="GeneID:1670"
/db_xref="HGNC:HGNC:2764"
/db_xref="MIM:600472"
/translation="MRTIAILAAILLVALQAQAESLQERADEATTQKQSGEDNQDLAI
SFAGNGLSALRTSGSQARATCYCRTGRCATRESLSGVCEISGRLYRLCCR"
BASE COUNT 106 a 130 c 100 g 109 t
ORIGIN
1 ttccactcct gctctccctc ctgcaggtga ccccagccat gaggaccatc gccatccttg
61 ctgccattct cctggtggcc ctgcaggccc aggctgagtc actccaggaa agagctgatg
121 aggctacaac ccagaagcag tctggggaag acaaccagga ccttgctatc tcctttgcag
181 gaaatggact ctctgctctt agaacctcag gttctcaggc aagagccacc tgctattgcc
241 gaactggccg ttgtgctacc cgtgagtccc tctccggggt gtgtgaaatc agtggccgcc
301 tctacagact ctgctgtcgc tgagcttcct agatagaaac caaagcagtg caagattcag
361 ttcaaggtcc tgaaaaaaga aaaacatttt actctgtgta ccttgtgtct ttctaaattt
421 ctctctccaa aataaagttc aagca
//