LOCUS BC069313 567 bp mRNA linear HUM 30-JUN-2004 DEFINITION Homo sapiens synovial sarcoma, X breakpoint 2, transcript variant 2, mRNA (cDNA clone MGC:96920 IMAGE:7262129), complete cds. ACCESSION BC069313 VERSION BC069313.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 567) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 567) AUTHORS Strausberg,R. TITLE Direct Submission JOURNAL Submitted (29-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Cancer Genomics Office, National Cancer Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Baylor Human Genome Sequencing Center cDNA Library Preparation: Baylor Human Genome Sequencing Center cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Baylor College of Medicine Human Genome Sequencing Center Center code: BCM-HGSC Web site: http://www.hgsc.bcm.tmc.edu/cdna/ Contact: amg@bcm.tmc.edu Gunaratne, P.H., Garcia, A.M., Lu, X., Hulyk, S.W., Loulseged, H., Kowis, C.R., Sneed, A.J., Martin, R.G., Muzny, D.M., Nanavati, A.N., Gibbs, R.A. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRBR Plate: 1 Row: d Column: 3. FEATURES Location/Qualifiers source 1..567 /db_xref="H-InvDB:HIT000263465_04" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:96920 IMAGE:7262129" /tissue_type="PCR rescued clones" /clone_lib="NIH_MGC_244" /note="Vector: pPCR-Script Amp SK(+)" gene 1..567 /gene="SSX2" /gene_synonym="HD21" /gene_synonym="HOM-MEL-40" /gene_synonym="MGC15364" /gene_synonym="MGC3884" /gene_synonym="SSX" /db_xref="GeneID:6757" /db_xref="MIM:300192" CDS 1..567 /gene="SSX2" /gene_synonym="HD21" /gene_synonym="HOM-MEL-40" /gene_synonym="MGC15364" /gene_synonym="MGC3884" /gene_synonym="SSX" /codon_start=1 /product="synovial sarcoma, X breakpoint 2, isoform b" /protein_id="AAH69313.1" /db_xref="GeneID:6757" /db_xref="MIM:300192" /translation="MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASE KIFYVYMKRKYEAMTKLGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFG RLQGISPKIMPKKPAEEGNDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRG EHAWTHRLRERKQLVIYEEISDPEEDDE" BASE COUNT 186 a 123 c 153 g 105 t ORIGIN 1 atgaacggag acgatgcctt tgcaaggaga cccacggttg gtgctcaaat accagagaag 61 atccaaaagg ccttcgatga tattgccaaa tacttctcta aggaagagtg ggaaaagatg 121 aaagcctcgg agaaaatctt ctatgtgtat atgaagagaa agtatgaggc tatgactaaa 181 ctaggtttca aggccaccct cccacctttc atgtgtaata aacgggccga agacttccag 241 gggaatgatt tggataatga ccctaaccgt gggaatcagg ttgaacgtcc tcagatgact 301 ttcggcaggc tccagggaat ctccccgaag atcatgccca agaagccagc agaggaagga 361 aatgattcgg aggaagtgcc agaagcatct ggcccacaaa atgatgggaa agagctgtgc 421 cccccgggaa aaccaactac ctctgagaag attcacgaga gatctggacc caaaaggggg 481 gaacatgcct ggacccacag actgcgtgag agaaaacagc tggtgattta tgaagagatc 541 agcgaccctg aagaagacga cgagtaa //