LOCUS BC069209 2787 bp mRNA linear HUM 30-JAN-2008 DEFINITION Homo sapiens raftlin, lipid raft linker 1, mRNA (cDNA clone IMAGE:5434191). ACCESSION BC069209 VERSION BC069209.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2787) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 2787) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (26-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Lou Staudt cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 54 Row: f Column: 5 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 41872576. FEATURES Location/Qualifiers source 1..2787 /db_xref="H-InvDB:HIT000263369" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:5434191" /tissue_type="Lymph, lymphoma" /clone_lib="NIH_MGC_99" /lab_host="DH10B" /note="Vector: pOTB7" gene <1..2787 /gene="RFTN1" /gene_synonym="MIG2" /gene_synonym="PIB10" /gene_synonym="PIG9" /gene_synonym="RAFTLIN" /db_xref="GeneID:23180" /db_xref="HGNC:HGNC:30278" CDS <1..1796 /gene="RFTN1" /gene_synonym="MIG2" /gene_synonym="PIB10" /gene_synonym="PIG9" /gene_synonym="RAFTLIN" /codon_start=3 /product="raftlin, lipid raft linker 1" /protein_id="AAH69209.1" /db_xref="GeneID:23180" /db_xref="HGNC:HGNC:30278" /translation="CLREPATAPSPPPVPYAAEMGCGLNKLEKRDEKRPGNIYSTLKR PQVETKIDVSYEYRFLEFTTLSAAELPGSSAVRLASLRDLPAQLLELYQQGFSLAALH PFVQPTHEREKTPLEHIFRAILIKKTDRSQKTDLHNEGYILELDCCSSLDHPTDQKLI PEFIKKIQEAASQGLKFVGVIPQYHSSVNSAGSSAPVSTANSTEDARDAKNARGDHAS LENEKPGTGDVSSAPAGRNQSPEPSSGPRGEVPLAKQPSSPSGEGDGGELSPQGVSKT LDGPESNPLEVHEEPLSGKMEIFTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLD ANWLEHMSDHFRKGGMLVNAVFYLGIVNDSLHGLTDGVFIFEVVSTEDSKTIQGYDAI VVEQWTVLEGVEVQTDYVPLLNSLAAYGWQLTCVLPTPVVKTTSEGSVSTKQIVFLQR PCLPQKIKKKESKFQWRFSREEMHNRQMRKSKGKLSARDKQQAEENEKNLEDQSSKAG DMGNCVSGQQQEGGVSEEMKGPVQEDKGEQLSPGGLLCGVGVEGEAVQNGPASHSRAL VGICTGHSNPGEDARDGDAEEVRELGTVEEN" BASE COUNT 715 a 700 c 744 g 628 t ORIGIN 1 gctgcctcag ggagcccgcg accgcgcctt ctcctccgcc ggtcccatac gctgctgaaa 61 tgggttgcgg attgaacaag ttagagaaac gtgatgaaaa acggcctggg aatatttatt 121 caactttgaa gaggcctcag gtggaaacca agatagatgt gtcctatgaa taccgcttcc 181 tggagttcac gactctgagt gctgcggagc tccctgggtc ctcagcagtg aggctggcct 241 ccctgcgtga cctgcccgcc cagctcctgg agctgtacca gcagggcttc tcgctggcgg 301 ccctgcaccc cttcgtgcag cccacccatg agcgggagaa gacgcccctg gagcacatct 361 ttagagccat cctgatcaag aaaaccgaca gatctcagaa aactgatctt cacaatgaag 421 gctacatctt ggaattagat tgctgttcct ccttagacca cccgacagac cagaaactca 481 tcccagagtt cattaagaag atccaggagg ctgcaagcca gggcctgaaa ttcgttggtg 541 ttatacctca gtaccattcc tctgtgaact cggcaggcag cagtgctccg gtgtctactg 601 ccaacagcac cgaggatgcc agagatgcaa aaaacgcacg tggggatcac gcgtcactgg 661 agaatgagaa accggggact ggggatgtga gcagtgctcc ggctgggaga aaccaaagcc 721 cagagcccag ctcaggcccc agaggggagg tgcccctcgc caagcagccc agctcaccct 781 ccggagaggg agatggtgga gaactttcac cacagggggt gagcaagaca ctggatggac 841 cggagagcaa ccccttggag gtgcatgaag agccactctc agggaaaatg gagatcttca 901 cccttttcaa caaaccgaag agccatcaga agtgccggca atactaccct gtcaccattc 961 ctctccatgt ctccaagaat ggccagacag tgagcggttt ggacgccaac tggttagagc 1021 acatgagcga ccacttccgg aaaggaggca tgctggtgaa cgcagtcttc taccttggaa 1081 tagtgaatga ttccttacat ggcttgacag atggagtatt catctttgaa gttgtttcca 1141 cagaagatag caaaaccata cagggctatg atgctattgt ggttgaacaa tggacagtcc 1201 tggaaggtgt cgaagtgcag acagactacg tgcccctgct gaactcgctg gcggcctatg 1261 gctggcagct cacctgtgtg ctaccaactc ccgtcgtcaa gactaccagc gaggggagtg 1321 tatccaccaa gcagattgtc tttcttcaga gaccgtgtct acctcagaaa atcaagaaga 1381 aggaatcgaa gtttcagtgg cgattctcca gagaagaaat gcacaacagg cagatgagga 1441 aatcaaaagg taaactcagt gccagagaca aacaacaagc agaagaaaat gagaagaact 1501 tagaagacca gtcttccaaa gctggagaca tgggaaactg tgtttcggga cagcagcagg 1561 agggtggagt ctccgaggag atgaagggcc ctgtccaaga ggacaaggga gaacagctgt 1621 cccctggtgg cctgctgtgt ggggtgggtg tggagggtga ggctgtgcag aatggtcctg 1681 ccagccacag cagggccctg gtggggattt gcactgggca ctccaatcct ggagaggatg 1741 ccagggacgg ggatgctgag gaagtcagag agcttggtac ggttgaagaa aactgagtct 1801 tgggcaattt gtgctaaaac taggtgagtt gccaaaccca aggcatctta ccaacagctg 1861 gtttgggggc tggtttccct ggtgttgtgt gttacctacc ctttggcttg gcttgacctc 1921 tccttgtgag ctcacctgag ccctcccagg gccaggttcc tgacagtgtt ggtttttgca 1981 catccactgg aaaggtgtca ttaatgaccc agtgttagaa tgcaagaggt caggttattc 2041 tagccctcat ggctgaaggc ccagtcctgg ctccaccact cctccagcca gagggtctgg 2101 accatccagt gcctgtcctc gccacagggc ctccagggag cattcgggtc aattccatgg 2161 acaccctggg ctacaaacca aggctgctgt tcatcccaca tcgtgtgggg cagtgtccat 2221 cccctgcagc tacttggtga cttaacaact ccaggagccc tgtcagctgc cctcctccac 2281 ctaaacccct tcgactcttc tgctttgaca aagaaaatga cattggggag gggaggtgct 2341 ccgcctccca gcttttctca aaatagtcct atagatactg gtaatctgga aatgaagaag 2401 taattctgtc tctgcaccta cttttgcaga atgttcaagg aagtattctg tgttagtatt 2461 aatgccaaaa agttgttttt aaaggttttg tactcagcac atcatacaaa ccacattact 2521 tctgtcactt cagggcatcg ggactggctg gcgcccttgt tatgtgctat tttaatcagt 2581 gtaacattgg tcaagttgtt acccatgtat gctgtgttta tcatgtgtat atcgtccaga 2641 aagtattaag gctttaggta gatgcaactg gcgaaccttg gagagggaat gctgattgtc 2701 ttgaccaaac ccacagcctg tctcttctct tgtttagtta cttacggcaa taaatcatct 2761 atgagttaaa aaaaaaaaaa aaaaaaa //