LOCUS BC069033 1912 bp mRNA linear HUM 26-JUN-2007 DEFINITION Homo sapiens piggyBac transposable element derived 1, mRNA (cDNA clone IMAGE:6286015), partial cds. ACCESSION BC069033 VERSION BC069033.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1912) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1912) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: CGAP (Stanford) cDNA Library Preparation: Rubin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAL Plate: 54 Row: k Column: 20 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 25777740. FEATURES Location/Qualifiers source 1..1912 /db_xref="H-InvDB:HIT000263216" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6286015" /tissue_type="Liver, hepatocellular carcinoma" /clone_lib="NIH_MGC_100" /lab_host="DH10B" /note="Vector: pOTB7" gene 1..>1912 /gene="PGBD1" /gene_synonym="dJ874C20.4" /gene_synonym="HUCEP-4" /gene_synonym="SCAND4" /db_xref="GeneID:84547" /db_xref="HGNC:HGNC:19398" CDS 267..>1912 /gene="PGBD1" /gene_synonym="dJ874C20.4" /gene_synonym="HUCEP-4" /gene_synonym="SCAND4" /codon_start=1 /product="PGBD1 protein" /protein_id="AAH69033.1" /db_xref="GeneID:84547" /db_xref="HGNC:HGNC:19398" /translation="MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICR LRFRHFCYQEAHGPQEALAQLRELCHQWLRPEMHTKEQIMELLVLEQFLTILPKELQP CVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQDMHPMVAEYQGVSLECQSLQ LLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNPVRSQTLVK TEEETAQAVAAEKWSHLSLTRRNLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSE EMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLWARMHISSLEYA AGDITRKGRKKDKARVSELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTK RDIKPNFPSWSALDSGLLNLKSEKLNPVELFELFFDDETFNLIVNETNNYASQKNVSL EVTVQEMRCVFGVLLLSGFMRHPRREMYWEVSDTDQNLVRDAIRRDRFELIFSNLHFA DNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEKKKKKKKK" BASE COUNT 579 a 424 c 471 g 438 t ORIGIN 1 ctacgtcttt gttgtgcgcg ttcctgaact tttggtccat taaccaacaa ttagacacgc 61 cggtattcag tgcctggcgc ggtgctagat gctgggtgta atctcagaaa aatacattca 121 ggggcgcgcc tgagggtgct ggctgctggc atctcaggtg ctttacgtgc attcgtgaag 181 aagcccatca gtatttcttg aataccagat ctctatttct gaatatagac cccaagctaa 241 gtgaagcttt agcctctaag ctcaacatgt atgaagcttt gccaggccct gctcctgaaa 301 atgaagatgg ccttgtgaaa gtgaaggagg aagatcccac ctgggagcag gtgtgcaact 361 cacaggaggg cagctcccac actcaggaga tttgccgcct gcgctttcgg cacttctgct 421 accaggaggc tcacggaccc caggaagctc tggcccaact ccgagaactt tgtcatcaat 481 ggctgagacc ggagatgcac accaaggaac agataatgga actgctggtg ctggagcagt 541 tcctgaccat cctgcccaag gagctccagc cctgtgtgaa gacatatcct ctggagagtg 601 gagaggaggc agtgacagtg ctggagaatc tagagacagg aagtggagac acaggacaac 661 aggcctctgt ctatattcag ggacaggaca tgcacccaat ggtggcagaa tatcaaggag 721 tctctttgga gtgtcagagc ctccagctcc tgcctgggat aaccaccctg aagtgtgaac 781 ctccacagcg tcctcaaggg aacccccaag aagtgagtgg gcctgttccc cacggatcag 841 ctcatctcca ggaaaaaaac cccagagaca aggctgtagt gcctgtgttt aacccagtca 901 ggtcccagac attggtgaag actgaggaag aaacagccca ggccgttgct gcagagaagt 961 ggtcacatct gagtctgact cggaggaacc tctgtgggaa ctcagctcag gagacagtta 1021 tgagcctcag tccgatgact gaagaaattg taactaaaga tagattgttt aaagcaaagc 1081 aagaaacttc tgaagaaatg gaacaaagtg gagaagcctc aggaaagccc aacagagagt 1141 gtgcacccca gattccttgt agtactccta ttgctactga aaggacagtt gcacatttga 1201 acactctgaa ggaccgtcac ccaggtgatt tgtgggcccg catgcacatc tcatccctgg 1261 aatatgctgc aggagacatt acccgaaaag ggagaaaaaa agacaaagct cgagtgagtg 1321 aactgctcca aggcctctca ttctctggtg actcagatgt ggaaaaagat aatgagcctg 1381 agatccagcc tgctcaaaag aagttaaagg tatcatgttt cccagaaaag agttggacca 1441 aaagagacat taaacccaat tttccaagct ggtcagcact ggattctgga cttttgaatc 1501 tcaagagcga aaagttgaac ccagtagagc tttttgaatt attttttgat gatgaaacat 1561 tcaacttaat tgtcaatgaa accaataatt atgcttctca gaaaaatgtc agcttggaag 1621 tcacagttca ggaaatgagg tgtgtgtttg gtgtcttact tttgagtgga tttatgaggc 1681 atcctagaag ggaaatgtat tgggaagtct ctgacaccga tcagaacctg gttagagatg 1741 caatcagaag ggacagattt gaattgattt tctcaaacct gcactttgca gataatggcc 1801 acctagatca aaaagataag tttacaaagt tgagacctct cataaaacaa atgaataaaa 1861 atttcctctt gtatgctccc ctggaaaaaa aaaaaaaaaa aaaaaaaaaa aa //